Strain Fitness in Pseudomonas putida KT2440 around PP_4136

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,671,823	+		PP_4133	0.40	+0.4
4,671,862	+		PP_4133	0.50	+0.4
4,672,093	+		PP_4134	0.13	+0.9
4,672,232	+		PP_4134	0.51	-0.0
4,672,457	+		PP_4135	0.16	-1.3
4,672,459	+		PP_4135	0.17	+0.8
4,672,459	+		PP_4135	0.17	+0.8
4,672,459	+		PP_4135	0.17	+0.4
4,672,459	+		PP_4135	0.17	+0.0
4,672,459	+		PP_4135	0.17	-0.8
4,672,459	+		PP_4135	0.17	-1.2
4,672,489	+		PP_4135	0.25	-2.1
4,672,489	+		PP_4135	0.25	+0.9
4,672,489	+		PP_4135	0.25	-0.1
4,672,489	+		PP_4135	0.25	-0.3
4,672,489	+		PP_4135	0.25	-0.8
4,672,753	+				-0.6
4,672,847	+		PP_4136	0.35	+1.3
4,672,915	-		PP_4136	0.62	+0.2
4,673,048	+				-3.1
4,673,048	+				-0.5
4,673,048	+				+0.7
4,673,063	+				-0.3
4,673,064	-				-0.9
4,673,102	+				-0.9
4,673,103	-				+0.1
4,673,115	+				-1.5
4,673,125	+				-1.0
4,673,125	+				-0.3
4,673,125	+				-1.2
4,673,125	+				+0.3
4,673,126	-				-0.3
4,673,225	+				-2.0
4,673,225	+				-0.1
4,673,226	-				-1.0
4,673,243	-				-0.0
4,673,243	-				+0.4
4,673,499	-		PP_4137	0.13	+0.4
4,673,571	+		PP_4137	0.16	-0.1
4,673,571	+		PP_4137	0.16	+1.4
4,673,572	-		PP_4137	0.17	+0.5
4,673,572	-		PP_4137	0.17	-1.0
4,673,572	-		PP_4137	0.17	+0.3
4,673,718	+		PP_4137	0.24	+0.0
4,673,718	+		PP_4137	0.24	-0.1
4,673,718	+		PP_4137	0.24	-1.7
4,673,718	+		PP_4137	0.24	-0.1
4,673,718	+		PP_4137	0.24	+1.2
4,673,719	-		PP_4137	0.24	-2.2
4,673,719	-		PP_4137	0.24	+0.4
4,673,758	+		PP_4137	0.26	+0.2
4,673,758	+		PP_4137	0.26	+0.0
4,673,759	-		PP_4137	0.26	+0.8
4,673,763	+		PP_4137	0.26	+1.1
4,673,832	+		PP_4137	0.29	+0.1
4,673,833	-		PP_4137	0.29	-0.3
4,673,835	+		PP_4137	0.29	-0.5
4,673,835	+		PP_4137	0.29	+0.4
4,673,835	+		PP_4137	0.29	+0.7
4,673,835	+		PP_4137	0.29	+0.5
4,673,836	-				-0.7
4,673,836	-		PP_4137	0.29	-1.1
4,673,836	-		PP_4137	0.29	-0.0
4,673,836	-		PP_4137	0.29	-0.7
4,673,860	-		PP_4137	0.30	+1.4
4,673,868	+		PP_4137	0.31	+0.6
4,673,952	+		PP_4137	0.35	-0.7
4,673,953	-		PP_4137	0.35	+1.5
4,673,953	-		PP_4137	0.35	+0.0
4,673,953	-		PP_4137	0.35	-0.2