Strain Fitness in Pseudomonas putida KT2440 around PP_4098

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,632,361	+				+0.6
4,632,383	+				-0.7
4,632,383	+				+1.0
4,632,383	+				-0.5
4,632,384	-				-0.7
4,632,384	-				-1.0
4,632,384	-				-0.9
4,632,394	-				-0.2
4,632,543	-				+1.2
4,632,543	-				+0.1
4,632,551	-				-2.7
4,633,289	-				-0.1
4,633,289	-				+0.5
4,633,289	-				+1.0
4,633,295	+				+1.0
4,633,310	-				+0.2
4,633,332	-				-0.5
4,633,332	-				-1.1
4,633,798	+		PP_4098	0.28	+0.0
4,633,799	-		PP_4098	0.28	-0.3
4,633,893	-		PP_4098	0.33	+2.3
4,633,893	-		PP_4098	0.33	-1.1
4,633,921	+		PP_4098	0.35	-0.1
4,635,138	-				+2.3
4,635,138	-				+2.1
4,635,212	-		PP_4099	0.15	+2.3
4,635,212	-		PP_4099	0.15	+2.3
4,635,215	+		PP_4099	0.15	+0.7
4,635,216	-		PP_4099	0.15	+2.4
4,635,216	-		PP_4099	0.15	+2.4
4,635,216	-		PP_4099	0.15	+2.3
4,635,216	-		PP_4099	0.15	+2.3
4,635,216	-		PP_4099	0.15	+2.2
4,635,383	+		PP_4099	0.42	+2.3
4,635,383	+		PP_4099	0.42	+2.2
4,635,383	+		PP_4099	0.42	+2.4
4,635,383	+		PP_4099	0.42	+2.3
4,635,383	+		PP_4099	0.42	+2.4
4,635,384	-		PP_4099	0.42	+2.4
4,635,384	-		PP_4099	0.42	+2.3
4,635,384	-		PP_4099	0.42	+2.3
4,635,385	+		PP_4099	0.42	+2.3
4,635,385	+		PP_4099	0.42	+2.3
4,635,385	+		PP_4099	0.42	+2.3
4,635,385	+		PP_4099	0.42	+2.2
4,635,386	-		PP_4099	0.42	+2.4
4,635,386	-		PP_4099	0.42	+2.4
4,635,386	-		PP_4099	0.42	+2.3
4,635,386	-		PP_4099	0.42	+2.4
4,635,386	-		PP_4099	0.42	+2.3
4,635,386	-		PP_4099	0.42	+2.3
4,635,454	+		PP_4099	0.53	+2.2
4,635,522	+		PP_4099	0.63	+2.2
4,635,522	+		PP_4099	0.63	+2.2
4,635,523	-		PP_4099	0.64	+2.3
4,635,523	-		PP_4099	0.64	+2.2
4,635,704	+				+2.2
4,635,704	+				+2.2
4,635,704	+				+2.3
4,635,705	-				+2.3
4,635,705	-				+2.2
4,635,705	-				+2.4
4,635,705	-				+2.3
4,635,705	-				+2.4
4,635,705	-				+2.2
4,635,708	-				+2.4
4,635,708	-				+2.3
4,635,708	-				+2.3
4,635,708	-				+2.4
4,635,741	+				+2.3
4,635,741	+				+2.4
4,635,742	-				+2.3
4,635,750	-				+2.4
4,635,860	+		PP_4100	0.11	+0.5
4,635,860	+		PP_4100	0.11	+0.8
4,636,030	+		PP_4100	0.54	-0.3
4,636,030	+		PP_4100	0.54	+0.3
4,636,030	+		PP_4100	0.54	+0.4
4,636,030	+		PP_4100	0.54	+0.2
4,636,030	+		PP_4100	0.54	+0.2
4,636,030	+		PP_4100	0.54	+0.0
4,636,031	-		PP_4100	0.54	-1.6
4,636,031	-		PP_4100	0.54	-0.3
4,636,031	-		PP_4100	0.54	-1.6
4,636,031	-		PP_4100	0.54	+0.1
4,636,070	-		PP_4100	0.64	+0.8
4,636,070	-		PP_4100	0.64	-2.0
4,636,074	+		PP_4100	0.65	-0.6
4,636,075	-		PP_4100	0.66	-1.8
4,636,102	+		PP_4100	0.73	-0.1
4,636,103	-		PP_4100	0.73	-2.6