Strain Fitness in Pseudomonas putida KT2440 around PP_3883

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,402,720	+		PP_3881	0.76	-0.3
4,402,720	+		PP_3881	0.76	+0.5
4,402,720	+		PP_3881	0.76	+0.4
4,402,721	-		PP_3881	0.76	-2.2
4,402,721	-		PP_3881	0.76	-0.1
4,402,817	-		PP_3881	0.81	+0.1
4,402,961	+		PP_3881	0.89	+0.0
4,402,961	+		PP_3881	0.89	-0.3
4,402,961	+		PP_3881	0.89	-0.9
4,402,961	+		PP_3881	0.89	+1.0
4,402,962	-		PP_3881	0.89	+0.7
4,403,161	+		PP_3882	0.10	-0.1
4,403,231	-		PP_3882	0.25	-0.1
4,403,231	-		PP_3882	0.25	-0.7
4,403,300	+		PP_3882	0.40	-0.2
4,403,301	-		PP_3882	0.40	+1.6
4,403,352	-		PP_3882	0.51	-0.2
4,403,487	+		PP_3882	0.80	-0.1
4,403,488	-		PP_3882	0.80	-2.0
4,403,727	+				-0.1
4,403,763	+		PP_3883	0.15	+0.8
4,404,000	-		PP_3883	0.88	+0.3
4,404,000	-		PP_3883	0.88	+2.0
4,404,094	+		PP_3884	0.17	+0.2
4,404,095	-		PP_3884	0.17	+1.3
4,404,240	-		PP_3884	0.62	-1.2
4,404,285	-		PP_3884	0.76	-0.2
4,404,453	+				+0.4
4,404,478	+				+1.1
4,404,478	+				+0.4
4,404,478	+				-0.0
4,404,478	+				-0.9
4,404,480	+				+0.7
4,404,480	+				-0.5
4,404,480	+				-0.3
4,404,481	-				-0.0
4,404,489	-				+0.2
4,404,589	+		PP_5641	0.11	-0.2
4,404,590	-		PP_5641	0.11	+0.4
4,404,687	+		PP_5641	0.26	+0.5
4,404,687	+		PP_5641	0.26	+0.3
4,404,688	-		PP_5641	0.26	+1.1
4,404,688	-		PP_5641	0.26	+0.2
4,404,736	+		PP_5641	0.34	+1.2
4,404,736	+		PP_5641	0.34	+1.1
4,404,736	+		PP_5641	0.34	-1.4
4,404,736	+		PP_5641	0.34	+0.8
4,404,736	+		PP_5641	0.34	-0.7
4,404,736	+		PP_5641	0.34	+0.8
4,404,736	+		PP_5641	0.34	+0.2
4,404,736	+		PP_5641	0.34	-1.0
4,404,736	+		PP_5641	0.34	+0.2
4,404,736	+		PP_5641	0.34	-1.1
4,404,737	-		PP_5641	0.34	-1.0
4,404,737	-		PP_5641	0.34	+0.3
4,404,737	-		PP_5641	0.34	-0.1
4,404,737	-		PP_5641	0.34	+0.3
4,404,737	-		PP_5641	0.34	-0.2
4,404,737	-		PP_5641	0.34	-1.2
4,404,737	-		PP_5641	0.34	-0.0
4,404,737	-		PP_5641	0.34	+0.4
4,404,737	-		PP_5641	0.34	-0.8
4,404,738	+		PP_5641	0.34	-1.2
4,404,739	-		PP_5641	0.34	-1.0
4,404,739	-		PP_5641	0.34	-0.6
4,404,739	-		PP_5641	0.34	+0.8
4,404,740	+		PP_5641	0.35	-0.2
4,404,741	-		PP_5641	0.35	-2.6
4,404,741	-		PP_5641	0.35	-1.3
4,404,761	+		PP_5641	0.38	+0.1
4,404,761	+		PP_5641	0.38	+0.7
4,404,762	-		PP_5641	0.38	+0.9
4,404,762	-		PP_5641	0.38	+1.2
4,404,762	-		PP_5641	0.38	-0.9
4,404,776	+		PP_5641	0.40	+0.6
4,404,790	+		PP_5641	0.43	-0.4
4,404,808	+		PP_5641	0.45	+0.0
4,404,826	+		PP_5641	0.48	-1.7
4,404,826	+		PP_5641	0.48	+0.8
4,404,826	+		PP_5641	0.48	-1.2
4,404,827	-		PP_5641	0.48	+0.1
4,404,827	-		PP_5641	0.48	-0.1
4,404,836	+		PP_5641	0.50	-0.8
4,404,837	-		PP_5641	0.50	+1.2
4,404,837	-		PP_5641	0.50	-0.8
4,404,837	-		PP_5641	0.50	-0.9
4,404,887	-		PP_5641	0.58	+0.5
4,404,889	+		PP_5641	0.58	+0.9
4,404,889	+		PP_5641	0.58	-0.5
4,404,931	+		PP_5641	0.65	-0.3
4,404,932	-		PP_5641	0.65	-0.2
4,404,932	-		PP_5641	0.65	-0.2
4,404,932	-		PP_5641	0.65	+0.3