Strain Fitness in Pseudomonas putida KT2440 around PP_3164

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,584,011	+		PP_3163	0.17	+1.6
3,584,072	-		PP_3163	0.23	-2.0
3,584,263	+		PP_3163	0.42	+1.0
3,584,264	-		PP_3163	0.42	-2.6
3,584,264	-		PP_3163	0.42	-0.3
3,584,306	-		PP_3163	0.46	+0.0
3,584,360	+		PP_3163	0.51	+1.4
3,584,446	+		PP_3163	0.60	+0.4
3,584,446	+		PP_3163	0.60	-2.2
3,584,446	+		PP_3163	0.60	+0.2
3,584,567	-		PP_3163	0.72	-0.0
3,584,629	-		PP_3163	0.78	+0.7
3,584,644	+		PP_3163	0.79	+0.3
3,584,692	+		PP_3163	0.84	-0.8
3,584,692	+		PP_3163	0.84	-0.6
3,584,692	+		PP_3163	0.84	+0.5
3,584,693	-		PP_3163	0.84	-0.7
3,584,693	-		PP_3163	0.84	-0.2
3,584,747	-		PP_3163	0.89	-0.5
3,584,747	-		PP_3163	0.89	+0.1
3,584,747	-		PP_3163	0.89	+0.8
3,584,747	-		PP_3163	0.89	-1.1
3,584,788	+				-0.7
3,584,788	+				+0.6
3,584,789	-				-1.3
3,584,809	-				+0.6
3,584,824	+				+0.0
3,584,825	-				-0.3
3,584,875	-				+0.7
3,584,983	+				-0.1
3,584,983	+				-0.2
3,584,984	-				-1.7
3,584,984	-				-0.1
3,584,984	-				+1.8
3,584,987	+				+0.8
3,584,988	-				+1.6
3,585,098	-		PP_3164	0.14	-0.2
3,585,354	+		PP_3164	0.48	+0.8
3,585,355	-		PP_3164	0.48	+1.4
3,585,355	-		PP_3164	0.48	+0.8
3,585,595	-		PP_3164	0.80	-0.8
3,585,851	+				-1.4
3,585,852	-				+0.9
3,585,909	+				-0.8
3,585,909	+				-1.4
3,585,910	-				+0.3
3,585,910	-				+1.3
3,585,924	+				-0.4
3,585,924	+				+0.2
3,585,924	+				-0.1
3,585,925	-				+0.3
3,585,925	-				-0.3
3,585,925	-				-0.0
3,585,925	-				+0.3
3,585,997	-		PP_3165	0.14	-0.6
3,585,997	-		PP_3165	0.14	-1.4
3,585,997	-		PP_3165	0.14	-0.5
3,586,149	+		PP_3165	0.26	-0.9
3,586,150	-		PP_3165	0.26	+0.5
3,586,370	-		PP_3165	0.42	-0.0
3,586,384	-		PP_3165	0.43	-3.8
3,586,386	+		PP_3165	0.44	-1.7
3,586,415	-		PP_3165	0.46	-0.2
3,586,611	+		PP_3165	0.60	+0.4
3,586,657	-		PP_3165	0.64	+0.7