Strain Fitness in Pseudomonas putida KT2440 around PP_3027

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,413,902	+		PP_3026	0.56	+0.3
3,413,905	+		PP_3026	0.56	+0.4
3,413,905	+		PP_3026	0.56	-1.9
3,413,905	+		PP_3026	0.56	+0.7
3,413,910	-		PP_3026	0.57	+0.3
3,413,910	-		PP_3026	0.57	-1.2
3,413,910	-		PP_3026	0.57	+0.5
3,413,919	-		PP_3026	0.57	-2.7
3,413,956	+		PP_3026	0.59	-0.6
3,413,957	-		PP_3026	0.59	-1.7
3,413,957	-		PP_3026	0.59	-0.0
3,413,957	-		PP_3026	0.59	+0.2
3,413,998	+		PP_3026	0.62	-1.7
3,413,999	-		PP_3026	0.62	-0.9
3,414,014	+		PP_3026	0.63	+0.3
3,414,015	-		PP_3026	0.63	-1.0
3,414,117	+		PP_3026	0.69	-1.4
3,414,159	+		PP_3026	0.72	-0.7
3,414,180	+		PP_3026	0.73	-0.4
3,414,180	+		PP_3026	0.73	+0.3
3,414,181	-		PP_3026	0.73	-0.1
3,414,211	+		PP_3026	0.75	+0.6
3,414,246	+		PP_3026	0.77	+0.2
3,414,246	+		PP_3026	0.77	+0.5
3,414,265	-		PP_3026	0.78	+0.2
3,414,265	-		PP_3026	0.78	-2.3
3,414,374	-		PP_3026	0.85	+0.2
3,414,374	-		PP_3026	0.85	+0.0
3,414,430	+		PP_3026	0.88	-0.2
3,414,454	+				+0.6
3,414,455	-				-1.3
3,414,476	+				-0.6
3,414,477	-				+0.0
3,414,490	-				+1.1
3,414,490	-				+0.2
3,414,490	-				-1.6
3,414,515	+				-1.4
3,414,515	+				-0.6
3,414,516	-				-1.8
3,414,516	-				+0.3
3,414,522	-				-0.7
3,414,621	+				-0.3
3,414,622	-				+0.2
3,414,641	+				-0.2
3,414,642	-				+0.3
3,414,642	-				+0.2
3,414,661	+				+0.3
3,414,662	-				+0.8
3,414,719	+				-0.9
3,414,842	-				+0.0
3,414,849	-				-0.6
3,414,849	-				+0.1
3,414,874	+				-0.3
3,414,897	+				-1.2
3,414,898	-				-1.3
3,414,898	-				+0.9
3,414,913	+		PP_3027	0.11	+0.2
3,414,914	-		PP_3027	0.11	+1.1
3,414,914	-		PP_3027	0.11	-1.5
3,414,959	+		PP_3027	0.32	-1.9
3,414,960	-		PP_3027	0.32	-0.1
3,414,960	-		PP_3027	0.32	+2.5
3,414,960	-		PP_3027	0.32	+0.6
3,414,960	-		PP_3027	0.32	-1.1
3,414,972	+		PP_3027	0.38	+1.4
3,414,972	+		PP_3027	0.38	+0.4
3,414,973	-		PP_3027	0.38	-0.5
3,414,973	-		PP_3027	0.38	+0.7
3,414,973	-		PP_3027	0.38	-0.3
3,414,973	-		PP_3027	0.38	+2.2
3,415,107	+				-0.0
3,415,138	+		PP_3028	0.12	-0.8
3,415,138	+		PP_3028	0.12	-0.1
3,415,138	+		PP_3028	0.12	+5.0
3,415,138	+		PP_3028	0.12	-1.3
3,415,139	-		PP_3028	0.12	-0.8
3,415,154	+		PP_3028	0.17	-0.3
3,415,154	+		PP_3028	0.17	+0.8
3,415,332	+		PP_3028	0.74	-0.6
3,415,332	+		PP_3028	0.74	-0.4
3,415,359	+		PP_3028	0.82	+1.6
3,415,360	-		PP_3028	0.83	-1.0
3,415,360	-		PP_3028	0.83	-2.8
3,415,360	-		PP_3028	0.83	-0.8
3,415,360	-		PP_3028	0.83	+1.1
3,415,389	+				-0.0
3,415,389	+				+0.6
3,415,389	+				-0.3
3,415,390	-				+0.0
3,415,524	+				+0.7
3,415,524	+				+0.2
3,415,524	+				+0.4
3,415,525	-				-1.0
3,415,525	-				-0.1
3,415,589	+				+1.2
3,415,589	+				-0.4
3,415,590	-				-1.3
3,415,590	-				-0.5
3,415,690	+		PP_3029	0.15	+0.1
3,415,715	+		PP_3029	0.17	-1.4
3,415,716	-		PP_3029	0.17	-0.2
3,415,874	+		PP_3029	0.25	-1.5
3,415,877	+		PP_3029	0.25	-1.7
3,415,878	-		PP_3029	0.26	-0.5
3,415,889	+		PP_3029	0.26	+0.2
3,415,890	-		PP_3029	0.26	+0.1
3,415,970	+		PP_3029	0.31	-0.9
3,415,970	+		PP_3029	0.31	-0.3
3,415,970	+		PP_3029	0.31	-1.0
3,415,971	-		PP_3029	0.31	-1.7