Strain Fitness in Pseudomonas putida KT2440 around PP_2864

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,265,158	+		PP_2862	0.38	-1.4
3,265,158	+		PP_2862	0.38	+0.3
3,265,168	+		PP_2862	0.39	+0.2
3,265,169	-		PP_2862	0.39	+1.0
3,265,450	+		PP_2862	0.73	+0.7
3,265,450	+		PP_2862	0.73	-0.5
3,265,451	-		PP_2862	0.73	-0.4
3,265,451	-		PP_2862	0.73	+0.6
3,265,459	+		PP_2862	0.74	+0.7
3,265,465	+		PP_2862	0.74	-0.3
3,265,547	+		PP_2862	0.84	+0.6
3,265,579	-		PP_2862	0.88	+0.2
3,265,579	-		PP_2862	0.88	+1.3
3,265,579	-				-0.7
3,265,579	-		PP_2862	0.88	+0.0
3,265,582	+		PP_2862	0.88	-0.7
3,265,583	-		PP_2862	0.89	-0.5
3,265,850	+		PP_2863	0.38	-0.0
3,265,851	-		PP_2863	0.38	+0.3
3,265,876	+		PP_2863	0.45	+0.9
3,265,876	+		PP_2863	0.45	-2.4
3,265,877	-		PP_2863	0.45	+0.9
3,265,891	+		PP_2863	0.49	+0.6
3,265,892	-		PP_2863	0.49	+1.0
3,265,892	-		PP_2863	0.49	-0.3
3,266,067	-				+0.7
3,266,067	-				-0.3
3,266,095	-				+0.3
3,266,187	+		PP_2864	0.12	-0.4
3,266,188	-		PP_2864	0.12	+0.8
3,266,281	+		PP_2864	0.37	+0.6
3,266,428	+		PP_2864	0.77	+0.8
3,266,501	+				+0.4
3,266,501	+				-0.6
3,266,501	+				-2.0
3,266,501	+				-2.3
3,266,502	-				+1.8
3,266,502	-				-0.7
3,266,502	-				+0.6
3,266,601	-		PP_2865	0.12	+0.8
3,266,707	+		PP_2865	0.24	+1.3
3,266,719	-		PP_2865	0.25	-0.6
3,266,722	+		PP_2865	0.25	+0.7
3,266,722	+		PP_2865	0.25	-1.5
3,266,722	+		PP_2865	0.25	-0.8
3,266,723	-		PP_2865	0.25	-0.1
3,266,803	+		PP_2865	0.34	-0.7
3,266,803	+		PP_2865	0.34	+0.6
3,266,963	-		PP_2865	0.52	-0.8
3,267,019	+		PP_2865	0.58	+0.6
3,267,019	+		PP_2865	0.58	+0.3
3,267,020	-		PP_2865	0.58	+0.0
3,267,020	-		PP_2865	0.58	+0.2
3,267,020	-		PP_2865	0.58	+0.2
3,267,020	-		PP_2865	0.58	-0.1
3,267,020	-		PP_2865	0.58	+0.2
3,267,115	+		PP_2865	0.69	+0.4
3,267,115	+		PP_2865	0.69	-1.9
3,267,203	+		PP_2865	0.79	-2.7
3,267,203	+		PP_2865	0.79	-0.7
3,267,203	+		PP_2865	0.79	+0.2
3,267,204	-		PP_2865	0.79	-0.1
3,267,204	-		PP_2865	0.79	-1.1
3,267,204	-		PP_2865	0.79	-0.2
3,267,204	-		PP_2865	0.79	+0.4
3,267,385	-				-0.2
3,267,385	-				-1.2