Strain Fitness in Pseudomonas putida KT2440 around PP_2740

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,121,637	-		PP_2738	0.47	+0.2
3,121,678	+		PP_2738	0.56	+0.1
3,121,703	-		PP_2738	0.62	+0.5
3,121,718	-		PP_2738	0.66	+0.6
3,121,718	-		PP_2738	0.66	+0.4
3,121,743	+		PP_2738	0.72	+0.9
3,121,808	+		PP_2738	0.87	+0.3
3,121,848	+				-0.1
3,121,848	+				+0.1
3,121,848	+				-0.0
3,121,853	-				+0.2
3,121,862	+				-0.4
3,121,862	+				-0.1
3,121,862	+				+0.4
3,121,863	-				-1.5
3,121,863	-				+0.3
3,121,908	+				+0.6
3,122,078	+		PP_2739	0.25	-1.0
3,122,078	+		PP_2739	0.25	+0.2
3,122,079	-		PP_2739	0.25	+0.1
3,122,079	-		PP_2739	0.25	-0.3
3,122,081	+		PP_2739	0.25	-0.1
3,122,081	+		PP_2739	0.25	+0.3
3,122,081	+		PP_2739	0.25	-0.0
3,122,082	-		PP_2739	0.25	-0.4
3,122,082	-		PP_2739	0.25	-1.3
3,122,156	+		PP_2739	0.42	+0.9
3,122,272	-		PP_2739	0.67	-0.9
3,122,272	-		PP_2739	0.67	-0.0
3,122,318	+		PP_2739	0.77	-0.5
3,122,318	+		PP_2739	0.77	+0.2
3,122,318	+		PP_2739	0.77	-0.3
3,122,322	+		PP_2739	0.78	+0.7
3,122,322	+		PP_2739	0.78	-0.7
3,122,322	+		PP_2739	0.78	+0.5
3,122,322	+		PP_2739	0.78	-0.8
3,122,322	+		PP_2739	0.78	-0.9
3,122,322	+		PP_2739	0.78	+0.4
3,122,323	-		PP_2739	0.78	+1.0
3,122,323	-		PP_2739	0.78	+0.6
3,122,424	-				-0.3
3,122,424	-				-2.1
3,122,424	-				-0.2
3,122,540	+				-0.2
3,122,540	+				-0.7
3,122,540	+				+0.1
3,122,541	-				-0.4
3,122,541	-				-1.1
3,122,565	+				+1.5
3,122,566	-				+1.1
3,122,595	-				+0.3
3,122,985	+		PP_2740	0.47	+0.2
3,123,025	-		PP_2740	0.52	+1.0
3,123,378	-				+0.4
3,123,724	+				+0.9
3,123,855	+		PP_2741	0.15	-0.1
3,123,943	+		PP_2741	0.20	-0.2
3,123,973	+		PP_2741	0.22	+0.4
3,123,974	-		PP_2741	0.22	-0.6
3,123,992	+		PP_2741	0.23	+1.0
3,123,993	-		PP_2741	0.23	-0.8
3,124,000	+		PP_2741	0.24	-0.9
3,124,000	+		PP_2741	0.24	-1.2
3,124,126	-		PP_2741	0.31	+0.6
3,124,157	-		PP_2741	0.33	-2.6
3,124,161	-		PP_2741	0.33	-1.1
3,124,161	-		PP_2741	0.33	-0.6
3,124,273	+		PP_2741	0.40	-0.7
3,124,273	+		PP_2741	0.40	-0.1
3,124,279	+		PP_2741	0.41	-0.1
3,124,280	-		PP_2741	0.41	+0.7