Strain Fitness in Pseudomonas putida KT2440 around PP_2533

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,877,034	+		PP_2531	0.66	+1.7
2,877,041	-		PP_2531	0.66	-0.3
2,877,088	+		PP_2531	0.71	-0.0
2,877,292	+				+0.2
2,877,409	+				+0.4
2,877,410	-				-2.7
2,877,410	-				-1.7
2,877,410	-				+0.5
2,877,478	-				-0.1
2,877,500	+				-0.0
2,877,527	+				+0.2
2,877,528	-				+1.1
2,877,528	-				-1.4
2,877,681	+		PP_2532	0.34	+1.1
2,877,682	-		PP_2532	0.34	+0.5
2,877,682	-		PP_2532	0.34	-0.5
2,877,682	-		PP_2532	0.34	-0.7
2,877,682	-		PP_2532	0.34	-0.1
2,877,888	+		PP_2532	0.76	-0.9
2,877,889	-		PP_2532	0.77	+0.0
2,877,889	-		PP_2532	0.77	+0.4
2,878,001	-				+0.3
2,878,119	+		PP_2533	0.11	+0.5
2,878,128	+		PP_2533	0.12	+0.4
2,878,147	-		PP_2533	0.14	+1.2
2,878,162	+		PP_2533	0.15	-3.0
2,878,169	+		PP_2533	0.16	+0.5
2,878,169	+		PP_2533	0.16	+0.7
2,878,274	+		PP_2533	0.27	+0.6
2,878,275	-		PP_2533	0.27	+0.1
2,878,406	-		PP_2533	0.40	+1.9
2,878,970	+				+0.3
2,879,044	+				-0.4
2,879,049	+				-0.8
2,879,167	-				-0.6
2,879,180	+				-1.0
2,879,181	-				-0.5
2,879,281	-		PP_2534	0.13	+1.0
2,879,281	-		PP_2534	0.13	+0.0
2,879,281	-		PP_2534	0.13	-1.0
2,879,281	-		PP_2534	0.13	+0.9
2,879,333	-		PP_2534	0.19	-1.3
2,879,406	-		PP_2534	0.27	-0.3
2,879,408	-		PP_2534	0.27	+0.0
2,879,434	+		PP_2534	0.30	-0.8
2,879,434	+		PP_2534	0.30	+0.0
2,879,434	+		PP_2534	0.30	+0.2
2,879,435	-		PP_2534	0.30	-0.9
2,879,435	-		PP_2534	0.30	+0.9
2,879,535	+		PP_2534	0.41	+0.2
2,879,536	-		PP_2534	0.41	-2.1
2,879,548	-		PP_2534	0.43	-0.2
2,879,548	-		PP_2534	0.43	+0.2
2,879,657	+		PP_2534	0.55	-0.0
2,879,658	-		PP_2534	0.55	+0.8
2,879,658	-		PP_2534	0.55	+0.0
2,879,863	-		PP_2534	0.78	-2.0