Strain Fitness in Pseudomonas putida KT2440 around PP_2168

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,473,347	+		PP_2167	0.60	+0.7
2,473,488	+		PP_2167	0.67	-0.2
2,473,488	+		PP_2167	0.67	+0.2
2,473,489	-		PP_2167	0.67	+0.4
2,473,491	+		PP_2167	0.67	+0.1
2,473,491	+		PP_2167	0.67	+0.7
2,473,491	+		PP_2167	0.67	-0.9
2,473,492	-		PP_2167	0.67	+0.6
2,473,509	+		PP_2167	0.68	+0.1
2,473,583	-		PP_2167	0.72	-0.4
2,473,623	+		PP_2167	0.74	-0.5
2,473,646	+		PP_2167	0.76	+1.6
2,473,854	-		PP_2167	0.87	-3.5
2,473,854	-		PP_2167	0.87	-0.6
2,473,861	-		PP_2167	0.87	-0.2
2,473,920	+				+0.7
2,473,920	+				-1.1
2,473,921	-				-1.0
2,473,921	-				+0.3
2,473,921	-				-0.6
2,474,005	+				-0.2
2,474,144	+				+0.6
2,474,158	+				-1.2
2,474,159	-				-1.2
2,474,159	-				+0.7
2,474,159	-				-0.5
2,474,205	+				+0.7
2,474,205	+				-1.7
2,474,205	+				+0.8
2,474,273	+				+0.0
2,474,274	-				+0.9
2,474,290	+				+1.7
2,474,335	-				-0.6
2,474,573	+		PP_2168	0.32	+0.3
2,474,573	+		PP_2168	0.32	+0.0
2,474,573	+		PP_2168	0.32	+1.4
2,474,573	+		PP_2168	0.32	+0.6
2,474,574	-		PP_2168	0.32	-2.3
2,474,574	-		PP_2168	0.32	+1.3
2,474,588	+		PP_2168	0.34	+1.0
2,474,588	+		PP_2168	0.34	+0.6
2,474,588	+		PP_2168	0.34	+2.6
2,474,589	-		PP_2168	0.34	+1.5
2,474,589	-		PP_2168	0.34	+0.7
2,474,589	-		PP_2168	0.34	-0.2
2,474,591	+				+0.3
2,474,591	+		PP_2168	0.34	+0.4
2,474,591	+		PP_2168	0.34	+0.9
2,474,597	+		PP_2168	0.35	-0.3
2,474,597	+		PP_2168	0.35	+0.3
2,474,597	+				+1.4
2,474,642	+		PP_2168	0.40	-0.1
2,474,666	+		PP_2168	0.42	+1.6
2,474,675	+		PP_2168	0.43	+0.3
2,474,676	-		PP_2168	0.43	+1.1
2,474,679	+		PP_2168	0.44	+1.5
2,474,679	+		PP_2168	0.44	+1.1
2,474,680	-		PP_2168	0.44	+1.8
2,474,836	+		PP_2168	0.61	+1.8
2,474,836	+		PP_2168	0.61	+0.3
2,474,867	+		PP_2168	0.64	+1.0
2,474,868	-		PP_2168	0.64	+1.0
2,474,946	+		PP_2168	0.72	+1.5
2,474,946	+		PP_2168	0.72	+1.8
2,475,018	+		PP_2168	0.80	+1.4
2,475,045	+		PP_2168	0.83	-0.3
2,475,045	+		PP_2168	0.83	+1.3
2,475,045	+		PP_2168	0.83	+0.4
2,475,046	-		PP_2168	0.83	+1.3
2,475,046	-		PP_2168	0.83	+1.7
2,475,235	+				+0.9
2,475,486	+		PP_2169	0.13	-0.7
2,475,539	+		PP_2169	0.18	+1.1
2,475,539	+		PP_2169	0.18	-0.2
2,475,540	-		PP_2169	0.18	-0.8
2,475,540	-		PP_2169	0.18	+0.7
2,475,540	-		PP_2169	0.18	+0.2
2,475,627	-		PP_2169	0.27	-0.4
2,475,627	-		PP_2169	0.27	-2.2
2,475,627	-		PP_2169	0.27	+0.2
2,475,627	-		PP_2169	0.27	-0.7
2,475,627	-		PP_2169	0.27	-3.3
2,475,638	+		PP_2169	0.28	+0.3
2,475,639	-		PP_2169	0.28	-0.4
2,475,771	-		PP_2169	0.41	-0.8
2,475,900	-		PP_2169	0.54	+0.6
2,475,919	-		PP_2169	0.55	-1.5
2,476,076	+		PP_2169	0.71	+2.7