Strain Fitness in Pseudomonas putida KT2440 around PP_1968

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,229,257	+		PP_1967	0.50	+0.9
2,229,257	+		PP_1967	0.50	-2.9
2,229,336	-		PP_1967	0.60	+0.7
2,229,378	+		PP_1967	0.66	-0.1
2,229,378	+		PP_1967	0.66	+0.5
2,229,381	+		PP_1967	0.66	-0.4
2,229,381	+		PP_1967	0.66	-0.6
2,229,381	+		PP_1967	0.66	-0.2
2,229,382	-		PP_1967	0.66	+1.0
2,229,531	+		PP_1967	0.85	+0.4
2,229,532	-		PP_1967	0.85	-0.1
2,229,552	+		PP_1967	0.88	+1.3
2,229,552	+		PP_1967	0.88	+0.3
2,229,553	-		PP_1967	0.88	+0.8
2,229,553	-		PP_1967	0.88	-3.3
2,229,579	+				+0.6
2,229,579	+				-0.4
2,229,579	+				+0.6
2,229,579	+				+0.5
2,229,754	-				-0.8
2,229,769	-				-1.5
2,229,779	+				-0.4
2,229,779	+				-0.2
2,229,845	+				+0.3
2,229,845	+				+0.3
2,229,846	-				-0.1
2,229,846	-				-0.8
2,229,846	-				-1.0
2,229,876	+				-0.5
2,229,876	+				+0.3
2,229,876	+				-1.1
2,229,877	-				-0.9
2,229,905	+				+0.9
2,229,906	-				+0.1
2,229,942	+				+0.4
2,229,943	-				-1.8
2,229,997	-				-0.0
2,229,997	-				-1.7
2,229,997	-				-0.1
2,230,002	+				+0.2
2,230,005	+				+0.1
2,230,005	+				-1.8
2,230,006	-				-0.1
2,230,006	-				-0.4
2,230,006	-				+2.4
2,230,054	+				-0.0
2,230,187	+		PP_1968	0.24	-0.8
2,230,187	+		PP_1968	0.24	-2.2
2,230,188	-		PP_1968	0.24	-0.2
2,230,188	-		PP_1968	0.24	-1.0
2,230,188	-		PP_1968	0.24	-0.0
2,230,188	-		PP_1968	0.24	+0.1
2,230,188	-		PP_1968	0.24	-2.1
2,230,188	-		PP_1968	0.24	-0.6
2,230,188	-		PP_1968	0.24	-3.4
2,230,217	+		PP_1968	0.28	+0.2
2,230,218	-		PP_1968	0.28	-0.9
2,230,218	-		PP_1968	0.28	-2.7
2,230,311	-		PP_1968	0.43	-0.2
2,230,468	+		PP_1968	0.68	-1.2
2,230,468	+		PP_1968	0.68	-1.6
2,230,579	-		PP_1968	0.85	-1.9
2,230,579	-		PP_1968	0.85	-0.7
2,230,630	+				+1.4
2,230,631	-				-0.3
2,230,678	+				-0.0
2,230,895	+		PP_1969	0.11	-0.7
2,230,895	+		PP_1969	0.11	+0.3
2,230,895	+		PP_1969	0.11	-0.2
2,230,903	+		PP_1969	0.12	+1.0
2,230,903	+		PP_1969	0.12	-1.6
2,230,903	+				-1.2
2,230,904	-		PP_1969	0.12	+0.7
2,230,904	-		PP_1969	0.12	+1.1
2,230,907	+		PP_1969	0.12	-0.6
2,230,908	-		PP_1969	0.12	-1.7
2,230,908	-		PP_1969	0.12	+0.1
2,230,908	-		PP_1969	0.12	-0.1
2,230,914	+		PP_1969	0.13	-0.3
2,230,914	+		PP_1969	0.13	-0.8
2,230,914	+		PP_1969	0.13	+0.4
2,230,915	-		PP_1969	0.13	-0.3
2,230,986	-		PP_1969	0.20	-0.6
2,231,024	-		PP_1969	0.24	-0.7
2,231,065	+		PP_1969	0.28	-1.0
2,231,332	-		PP_1969	0.54	+0.7
2,231,332	-		PP_1969	0.54	+0.5
2,231,348	+		PP_1969	0.56	+0.3
2,231,442	+		PP_1969	0.65	-2.4
2,231,442	+		PP_1969	0.65	+0.4
2,231,442	+		PP_1969	0.65	+0.7
2,231,487	-		PP_1969	0.69	-0.2
2,231,487	-		PP_1969	0.69	-0.2
2,231,528	+				+1.4
2,231,528	+		PP_1969	0.73	+1.3
2,231,618	-		PP_1969	0.82	-0.4