Strain Fitness in Pseudomonas putida KT2440 around PP_1719

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,917,524	+		PP_1718	0.35	+0.7
1,917,525	-		PP_1718	0.35	-0.6
1,917,525	-		PP_1718	0.35	+0.5
1,917,633	+		PP_1718	0.45	+0.0
1,917,633	+		PP_1718	0.45	-0.2
1,917,634	-		PP_1718	0.45	-1.7
1,917,634	-		PP_1718	0.45	+0.9
1,917,918	-		PP_1718	0.72	+0.0
1,918,056	+		PP_1718	0.84	-0.2
1,918,056	+		PP_1718	0.84	-0.1
1,918,057	-		PP_1718	0.84	-0.6
1,918,087	-		PP_1718	0.87	-0.3
1,918,123	+				-0.5
1,918,123	+				+0.5
1,918,128	+				-0.3
1,918,128	+				+1.7
1,918,129	-				-0.6
1,918,129	-				-1.3
1,918,170	+				+1.5
1,918,171	-				-0.2
1,918,171	-				-0.0
1,918,242	+				-0.2
1,918,243	-				+0.2
1,918,275	-				+0.3
1,918,275	-				-0.8
1,918,343	+				+0.7
1,918,343	+				-0.4
1,918,343	+				-0.4
1,918,344	-				+0.9
1,918,376	+				+1.1
1,918,376	+				-0.1
1,918,409	+				+0.5
1,918,409	+				-0.3
1,918,431	+				+0.2
1,918,431	+				+1.4
1,918,432	-				+1.9
1,918,637	+		PP_1719	0.14	+0.2
1,918,638	-		PP_1719	0.14	+0.1
1,918,967	+		PP_1719	0.30	+0.1
1,918,967	+		PP_1719	0.30	+0.8
1,918,967	+		PP_1719	0.30	+1.9
1,918,968	-		PP_1719	0.30	+0.7
1,919,045	+		PP_1719	0.33	+1.8
1,919,045	+		PP_1719	0.33	+0.6
1,919,045	+		PP_1719	0.33	+0.6
1,919,046	-		PP_1719	0.33	+1.6
1,919,261	+		PP_1719	0.43	+1.3
1,919,261	+		PP_1719	0.43	+1.2
1,919,262	-		PP_1719	0.43	+0.9
1,919,262	-		PP_1719	0.43	+1.4
1,919,282	+		PP_1719	0.44	+0.1
1,919,301	-		PP_1719	0.45	+0.7
1,919,333	+		PP_1719	0.47	+1.1
1,919,334	-		PP_1719	0.47	-0.0
1,919,334	-		PP_1719	0.47	+0.4
1,919,334	-		PP_1719	0.47	-0.2
1,919,414	-		PP_1719	0.51	+0.2
1,919,440	-		PP_1719	0.52	+0.0
1,919,735	+		PP_1719	0.66	+1.0
1,919,735	+		PP_1719	0.66	+1.4
1,919,736	-		PP_1719	0.66	+1.2
1,919,753	+		PP_1719	0.67	+1.5
1,919,754	-		PP_1719	0.67	-0.4
1,919,754	-		PP_1719	0.67	+0.5
1,919,754	-		PP_1719	0.67	+0.4
1,919,777	+		PP_1719	0.68	+1.7
1,919,778	-		PP_1719	0.68	+1.7
1,919,778	-		PP_1719	0.68	+0.2
1,919,778	-		PP_1719	0.68	+1.9
1,919,778	-		PP_1719	0.68	+0.2
1,920,080	+		PP_1719	0.82	+1.1
1,920,081	-		PP_1719	0.82	+1.7
1,920,176	+		PP_1719	0.87	+0.4
1,920,177	-		PP_1719	0.87	+0.6
1,920,177	-		PP_1719	0.87	+1.6
1,920,206	+		PP_1719	0.88	+0.3
1,920,207	-		PP_1719	0.88	+0.4
1,920,207	-		PP_1719	0.88	+1.1
1,920,207	-		PP_1719	0.88	+1.2
1,920,207	-		PP_1719	0.88	+1.2
1,920,207	-		PP_1719	0.88	+0.7
1,920,207	-		PP_1719	0.88	+0.7
1,920,207	-		PP_1719	0.88	+1.0
1,920,207	-		PP_1719	0.88	+0.0
1,920,215	+		PP_1719	0.89	+2.1
1,920,215	+		PP_1719	0.89	+0.9
1,920,216	-		PP_1719	0.89	+0.9
1,920,216	-		PP_1719	0.89	+0.0
1,920,216	-		PP_1719	0.89	+1.7
1,920,257	+				+1.7
1,920,258	-				+1.4
1,920,456	+				+0.9
1,920,456	+				+0.6
1,920,456	+				+0.8
1,920,456	+				-0.6
1,920,456	+				+1.0
1,920,457	-				+0.9
1,920,457	-				-0.2
1,920,457	-				+0.7
1,920,457	-				-1.1
1,920,457	-				+0.7
1,920,460	-				+0.5
1,920,460	-				+0.7
1,920,460	-				+1.3
1,920,460	-				-0.2
1,920,502	-				+0.7
1,920,502	-				-0.7
1,920,502	-				+1.0
1,920,551	+				+0.6
1,920,551	+				+1.3
1,920,552	-				-1.0
1,920,728	+		PP_1720	0.17	-3.2
1,920,728	+		PP_1720	0.17	-0.5
1,920,728	+		PP_1720	0.17	-3.4
1,920,728	+		PP_1720	0.17	-0.0
1,920,729	-		PP_1720	0.17	+0.8
1,920,729	-		PP_1720	0.17	-0.2
1,920,729	-		PP_1720	0.17	+0.7
1,920,729	-		PP_1720	0.17	-0.0
1,920,729	-		PP_1720	0.17	-1.2
1,920,861	+		PP_1720	0.31	-0.5
1,920,862	-		PP_1720	0.31	+0.1
1,920,917	+		PP_1720	0.37	-0.5
1,920,917	+		PP_1720	0.37	-0.9
1,920,917	+		PP_1720	0.37	-3.0
1,920,917	+		PP_1720	0.37	-0.6
1,920,918	-		PP_1720	0.37	-0.4
1,920,918	-		PP_1720	0.37	+0.6
1,920,918	-		PP_1720	0.37	+0.5
1,920,918	-		PP_1720	0.37	+0.3
1,921,082	+		PP_1720	0.54	-0.1
1,921,083	-		PP_1720	0.54	-0.2
1,921,116	+		PP_1720	0.57	+0.4
1,921,117	-		PP_1720	0.58	-0.6
1,921,117	-				+0.7
1,921,117	-		PP_1720	0.58	+0.1
1,921,120	+		PP_1720	0.58	+0.2
1,921,120	+		PP_1720	0.58	+0.4
1,921,120	+		PP_1720	0.58	-0.5
1,921,190	+		PP_1720	0.65	+0.3
1,921,191	-		PP_1720	0.65	+0.0
1,921,381	-		PP_1720	0.85	-0.2
1,921,431	-				-0.8