Strain Fitness in Pseudomonas putida KT2440 around PP_1669

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,865,452	+				+1.4
1,865,452	+				+0.5
1,865,453	-				+0.4
1,865,453	-				+1.0
1,865,453	-				+0.4
1,865,453	-				+0.8
1,865,475	+				+0.4
1,865,483	+				+0.4
1,865,483	+				-0.0
1,865,483	+				+0.5
1,865,716	-		PP_1669	0.34	+0.1
1,865,716	-		PP_1669	0.34	+0.4
1,865,836	-		PP_1669	0.53	+0.7
1,865,836	-		PP_1669	0.53	-0.4
1,865,991	+		PP_1669	0.77	+0.4
1,865,991	+		PP_1669	0.77	-0.1
1,865,991	+		PP_1669	0.77	+0.7
1,865,992	-		PP_1669	0.77	+0.4
1,865,992	-		PP_1669	0.77	+0.7
1,865,992	-		PP_1669	0.77	+1.2
1,865,992	-		PP_1669	0.77	+0.7
1,866,069	+		PP_1669	0.89	+0.5
1,866,070	-		PP_1669	0.89	+1.2
1,866,141	+				+1.2
1,866,154	+				-2.2
1,866,208	-				-0.4
1,866,221	-				-0.9
1,866,287	+				-0.2
1,866,287	+				+0.4
1,866,288	-				+0.3
1,866,372	-		PP_1670	0.17	-2.9
1,866,384	+		PP_1670	0.19	-0.2
1,866,385	-		PP_1670	0.19	-0.1
1,866,388	+		PP_1670	0.20	-0.4
1,866,388	+		PP_1670	0.20	-1.2
1,866,388	+		PP_1670	0.20	+1.7
1,866,389	-		PP_1670	0.20	-0.3
1,866,389	-		PP_1670	0.20	+0.1
1,866,389	-		PP_1670	0.20	+0.2
1,866,390	+		PP_1670	0.20	+0.4
1,866,391	-		PP_1670	0.20	-0.6
1,866,478	-		PP_1670	0.37	+0.2
1,866,517	+		PP_1670	0.44	+0.5
1,866,517	+		PP_1670	0.44	+0.1
1,866,517	+		PP_1670	0.44	-1.1
1,866,517	+		PP_1670	0.44	-0.1
1,866,517	+		PP_1670	0.44	+0.4
1,866,517	+		PP_1670	0.44	-0.8
1,866,517	+		PP_1670	0.44	-0.1
1,866,517	+		PP_1670	0.44	-1.8
1,866,517	+		PP_1670	0.44	-0.6
1,866,518	-		PP_1670	0.44	-0.2
1,866,518	-		PP_1670	0.44	-0.4
1,866,518	-				-0.5
1,866,518	-		PP_1670	0.44	+0.9
1,866,518	-		PP_1670	0.44	+1.3
1,866,518	-		PP_1670	0.44	+0.6
1,866,518	-		PP_1670	0.44	+0.0
1,866,518	-		PP_1670	0.44	+0.9
1,866,518	-		PP_1670	0.44	-1.0
1,866,518	-		PP_1670	0.44	-2.1
1,866,518	-		PP_1670	0.44	-1.5
1,866,523	+		PP_1670	0.45	+0.5
1,866,524	-		PP_1670	0.45	-0.2
1,866,524	-				+0.2
1,866,673	+		PP_1670	0.73	+0.7
1,866,673	+		PP_1670	0.73	+0.5
1,866,673	+		PP_1670	0.73	+0.6
1,866,673	+		PP_1670	0.73	+0.4
1,866,673	+		PP_1670	0.73	+0.0
1,866,674	-		PP_1670	0.73	-1.8
1,866,674	-		PP_1670	0.73	-0.0
1,866,674	-		PP_1670	0.73	-0.5
1,866,674	-		PP_1670	0.73	-0.0
1,866,749	-		PP_1670	0.87	-0.5
1,866,817	+				-0.5
1,866,832	-				-1.8
1,867,053	+				-2.8