Strain Fitness in Pseudomonas putida KT2440 around PP_1355

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,543,607	-		PP_1354	0.33	-0.3
1,543,607	-		PP_1354	0.33	+1.0
1,543,752	+		PP_1354	0.45	+0.1
1,543,980	+		PP_1354	0.63	-0.3
1,543,981	-		PP_1354	0.63	+1.0
1,543,981	-		PP_1354	0.63	-0.1
1,543,981	-		PP_1354	0.63	+0.5
1,544,043	-		PP_1354	0.68	-0.8
1,544,094	+		PP_1354	0.72	-0.1
1,544,094	+		PP_1354	0.72	-1.1
1,544,211	+		PP_1354	0.81	+1.1
1,544,211	+		PP_1354	0.81	-0.0
1,544,212	-		PP_1354	0.82	-0.9
1,544,212	-		PP_1354	0.82	-1.2
1,544,432	-				-0.5
1,544,432	-				-0.2
1,544,474	-				+0.6
1,544,485	+				+0.7
1,544,485	+				+0.1
1,544,486	-				+0.3
1,544,486	-				+0.8
1,544,507	+				-0.5
1,544,519	+				-0.7
1,544,546	+				-0.7
1,544,547	-				-0.9
1,544,644	+				+0.4
1,544,645	-				+1.6
1,544,704	+				+2.6
1,544,705	-				-0.3
1,544,808	+		PP_1355	0.16	+0.7
1,544,809	-		PP_1355	0.16	+1.8
1,544,827	+		PP_1355	0.18	+1.6
1,544,828	-		PP_1355	0.18	+1.6
1,544,937	-		PP_1355	0.25	+0.7
1,545,078	+		PP_1355	0.34	+1.7
1,545,078	+		PP_1355	0.34	+0.4
1,545,078	+		PP_1355	0.34	+1.9
1,545,078	+		PP_1355	0.34	+2.0
1,545,078	+		PP_1355	0.34	+2.4
1,545,078	+		PP_1355	0.34	-0.5
1,545,079	-		PP_1355	0.34	+2.9
1,545,079	-		PP_1355	0.34	+0.4
1,545,079	-		PP_1355	0.34	+1.2
1,545,079	-		PP_1355	0.34	+0.9
1,545,079	-		PP_1355	0.34	+2.0
1,545,079	-		PP_1355	0.34	+1.1
1,545,123	+		PP_1355	0.37	+1.4
1,545,124	-		PP_1355	0.37	+1.4
1,545,124	-		PP_1355	0.37	+1.6
1,545,124	-		PP_1355	0.37	+1.4
1,545,255	+		PP_1355	0.45	+1.1
1,545,256	-		PP_1355	0.45	+2.5
1,545,256	-		PP_1355	0.45	+1.7
1,545,256	-		PP_1355	0.45	+0.2
1,545,256	-		PP_1355	0.45	+1.8
1,545,341	-		PP_1355	0.51	+1.1
1,545,341	-		PP_1355	0.51	+0.8
1,545,525	+		PP_1355	0.63	+1.8
1,545,525	+		PP_1355	0.63	+0.4
1,545,526	-		PP_1355	0.63	+1.8
1,545,526	-		PP_1355	0.63	+0.2
1,545,526	-		PP_1355	0.63	+1.8
1,545,552	+		PP_1355	0.64	+0.3
1,545,553	-		PP_1355	0.64	+2.3
1,545,553	-		PP_1355	0.64	+1.7
1,545,566	-				+0.1
1,545,640	-		PP_1355	0.70	+1.2
1,545,640	-		PP_1355	0.70	+2.6
1,545,640	-		PP_1355	0.70	+2.5
1,545,738	-		PP_1355	0.76	+0.4
1,545,915	+		PP_1355	0.88	+1.3
1,545,916	-		PP_1355	0.88	+2.2
1,545,916	-		PP_1355	0.88	+2.6
1,545,916	-		PP_1355	0.88	+2.0
1,545,916	-		PP_1355	0.88	+0.7
1,546,008	+				-1.0
1,546,008	+				+1.3
1,546,008	+				+2.0
1,546,008	+				+0.8
1,546,009	-				+2.3
1,546,066	-				+1.3
1,546,147	+				+0.4
1,546,188	-		PP_1356	0.12	-1.0
1,546,206	+		PP_1356	0.17	+2.5
1,546,206	+		PP_1356	0.17	+0.3
1,546,206	+		PP_1356	0.17	+1.0
1,546,206	+		PP_1356	0.17	+0.8
1,546,207	-		PP_1356	0.17	-0.1
1,546,207	-		PP_1356	0.17	+0.4
1,546,207	-		PP_1356	0.17	-0.8
1,546,399	+		PP_1356	0.71	-0.2
1,546,400	-		PP_1356	0.72	+0.3
1,546,441	+		PP_1356	0.83	+0.6
1,546,441	+		PP_1356	0.83	-0.6
1,546,441	+		PP_1356	0.83	-0.8
1,546,441	+		PP_1356	0.83	-0.4
1,546,544	+				-1.6
1,546,609	+				+1.1
1,546,641	+				+0.4
1,546,641	+				-0.1
1,546,641	+				+0.4
1,546,641	+				+0.7
1,546,663	+				-0.6
1,546,759	-				-0.7
1,546,759	-				-2.7
1,546,811	+		PP_1357	0.15	+1.1
1,546,893	-		PP_1357	0.23	-0.3
1,546,893	-		PP_1357	0.23	-0.6
1,546,893	-		PP_1357	0.23	-0.7
1,546,893	-		PP_1357	0.23	-0.7
1,547,041	+		PP_1357	0.37	-0.2
1,547,042	-		PP_1357	0.37	+0.3
1,547,042	-		PP_1357	0.37	-0.0
1,547,063	+		PP_1357	0.39	+1.1