Strain Fitness in Pseudomonas putida KT2440 around PP_1058

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,204,977	-		PP_1056	0.68	+1.4
1,204,977	-		PP_1056	0.68	-0.7
1,205,073	+		PP_1056	0.80	+0.7
1,205,074	-		PP_1056	0.80	-1.8
1,205,074	-		PP_1056	0.80	+0.2
1,205,074	-		PP_1056	0.80	-1.2
1,205,074	-		PP_1056	0.80	+0.8
1,205,097	+		PP_1056	0.83	+0.1
1,205,493	+		PP_1057	0.51	-0.1
1,205,493	+		PP_1057	0.51	-1.7
1,205,494	-		PP_1057	0.51	-1.1
1,205,494	-		PP_1057	0.51	+1.3
1,205,494	-		PP_1057	0.51	+0.6
1,205,494	-		PP_1057	0.51	+1.3
1,205,514	-		PP_1057	0.55	+1.7
1,205,514	-		PP_1057	0.55	+0.5
1,205,562	+		PP_1057	0.63	+0.7
1,205,563	-		PP_1057	0.64	-2.2
1,205,563	-		PP_1057	0.64	-1.1
1,205,563	-		PP_1057	0.64	-0.5
1,205,587	-		PP_1057	0.68	-0.1
1,205,587	-		PP_1057	0.68	-0.2
1,205,587	-		PP_1057	0.68	-0.9
1,205,587	-		PP_1057	0.68	+0.3
1,205,587	-		PP_1057	0.68	-0.0
1,205,762	-				-0.5
1,205,814	-				-0.7
1,205,818	-				-0.2
1,206,330	-		PP_1058	0.15	+1.1
1,206,373	-		PP_1058	0.17	+0.1
1,206,599	+		PP_1058	0.24	+0.5
1,206,600	-		PP_1058	0.24	+0.4
1,206,600	-		PP_1058	0.24	+1.0
1,206,601	+		PP_1058	0.24	+0.8
1,206,602	-		PP_1058	0.24	+0.6
1,206,602	-		PP_1058	0.24	+0.3
1,206,672	-		PP_1058	0.26	+1.1
1,206,672	-		PP_1058	0.26	+0.5
1,206,713	+		PP_1058	0.27	+1.1
1,206,749	+		PP_1058	0.29	+0.8
1,206,754	+		PP_1058	0.29	-0.8
1,206,754	+		PP_1058	0.29	-0.1
1,206,754	+		PP_1058	0.29	-0.3
1,206,754	+		PP_1058	0.29	+0.8
1,206,755	-		PP_1058	0.29	+0.5
1,206,755	-		PP_1058	0.29	+0.4
1,206,755	-		PP_1058	0.29	+0.7
1,206,755	-		PP_1058	0.29	+1.2
1,206,755	-		PP_1058	0.29	+0.4
1,206,758	+		PP_1058	0.29	+0.3
1,206,758	+		PP_1058	0.29	+0.2
1,206,758	+		PP_1058	0.29	+1.6
1,206,758	+		PP_1058	0.29	+0.5
1,206,758	+		PP_1058	0.29	+1.1
1,206,758	+		PP_1058	0.29	+1.0
1,206,759	-		PP_1058	0.29	+1.1
1,206,759	-		PP_1058	0.29	+1.2
1,206,759	-		PP_1058	0.29	+1.3
1,206,759	-		PP_1058	0.29	+0.9
1,206,759	-		PP_1058	0.29	-0.2
1,206,759	-		PP_1058	0.29	+0.5
1,206,759	-		PP_1058	0.29	+1.0
1,206,759	-		PP_1058	0.29	+1.4
1,206,759	-		PP_1058	0.29	+0.3
1,206,759	-		PP_1058	0.29	-0.5
1,206,869	+		PP_1058	0.32	+0.9
1,206,869	+		PP_1058	0.32	+1.2
1,206,948	+		PP_1058	0.35	+1.2
1,206,949	-		PP_1058	0.35	-0.2
1,206,956	+		PP_1058	0.35	+1.3
1,206,957	-		PP_1058	0.35	+1.8
1,206,980	+				-0.8
1,206,980	+		PP_1058	0.36	+0.3
1,206,980	+		PP_1058	0.36	+1.1
1,206,981	-		PP_1058	0.36	+0.3
1,206,981	-		PP_1058	0.36	+0.6
1,207,068	-		PP_1058	0.39	+0.4
1,207,079	+		PP_1058	0.39	+0.2
1,207,080	-		PP_1058	0.39	+0.9
1,207,089	-		PP_1058	0.39	+1.5
1,207,089	-		PP_1058	0.39	+0.9
1,207,247	+		PP_1058	0.44	+1.5
1,207,247	+		PP_1058	0.44	+0.6
1,207,391	+		PP_1058	0.49	-0.1
1,207,392	-		PP_1058	0.49	-0.4
1,207,424	+		PP_1058	0.50	+0.7
1,207,425	-		PP_1058	0.50	+1.1
1,207,425	-		PP_1058	0.50	+0.5
1,207,436	-		PP_1058	0.50	+0.3
1,207,565	+		PP_1058	0.54	+0.2
1,207,696	-		PP_1058	0.59	+0.6
1,207,696	-		PP_1058	0.59	+0.9
1,207,696	-		PP_1058	0.59	+0.9
1,207,730	+		PP_1058	0.60	+1.3
1,207,801	+		PP_1058	0.62	+1.6
1,207,952	+		PP_1058	0.67	+0.1
1,207,952	+		PP_1058	0.67	+0.7
1,207,952	+		PP_1058	0.67	+0.8
1,207,952	+		PP_1058	0.67	+0.1
1,207,953	-		PP_1058	0.67	+1.3
1,207,953	-		PP_1058	0.67	-0.1
1,207,953	-		PP_1058	0.67	+0.8
1,207,953	-		PP_1058	0.67	+0.9
1,208,149	+		PP_1058	0.73	+0.4
1,208,150	-		PP_1058	0.73	+1.1
1,208,150	-		PP_1058	0.73	-1.6
1,208,213	+		PP_1058	0.75	-0.1
1,208,292	-		PP_1058	0.77	+0.6
1,208,352	-		PP_1058	0.79	+1.7
1,208,370	-		PP_1058	0.80	+0.9
1,208,370	-		PP_1058	0.80	+1.2
1,208,412	+		PP_1058	0.81	+0.3
1,208,413	-		PP_1058	0.81	-0.0
1,208,413	-		PP_1058	0.81	+1.2
1,208,413	-				+1.1
1,208,413	-		PP_1058	0.81	+0.8
1,208,517	-		PP_1058	0.85	-2.4
1,208,517	-		PP_1058	0.85	-0.1
1,208,522	+		PP_1058	0.85	+0.9
1,208,528	+		PP_1058	0.85	+1.3
1,208,585	+		PP_1058	0.87	+0.6
1,208,586	-		PP_1058	0.87	+0.6
1,208,612	+		PP_1058	0.88	+0.4
1,208,613	-		PP_1058	0.88	+1.0
1,208,613	-		PP_1058	0.88	+0.7
1,208,613	-		PP_1058	0.88	+0.7
1,208,657	+		PP_1058	0.89	+1.1
1,208,658	-		PP_1058	0.89	+0.9
1,208,700	+				+0.7
1,208,702	+				+0.7
1,208,703	-				+0.6
1,208,703	-				+0.7
1,208,739	-				-0.6
1,208,739	-				+1.9
1,208,774	+				+0.8
1,208,775	-				+0.8
1,208,784	+				+1.2
1,208,827	-				+0.5
1,208,827	-				-0.1
1,208,841	-				+1.0
1,208,841	-				+1.1
1,208,902	+				+0.9
1,208,903	-				-0.7
1,208,903	-				+1.1
1,208,950	+				+1.0
1,208,951	-				-0.0
1,208,951	-				-0.7
1,209,000	+				+0.8
1,209,000	+				+0.9
1,209,008	+				+0.1
1,209,021	-				-1.6
1,209,047	-				+0.1
1,209,061	+				+0.1
1,209,062	-				-0.4
1,209,062	-				+0.0
1,209,062	-				-0.0
1,209,078	-				+0.6
1,209,078	-				-2.0
1,209,146	+				+0.9
1,209,146	+				+0.5
1,209,146	+				+1.0
1,209,146	+				+0.5
1,209,146	+				+0.5
1,209,147	-				+0.1
1,209,147	-				+0.5
1,209,147	-				+0.2
1,209,192	+				-0.8
1,209,208	+				+1.3
1,209,209	-				-1.9
1,209,209	-				-0.7
1,209,210	+				+1.4
1,209,210	+				+0.6
1,209,210	+				+0.4
1,209,211	-				+0.1
1,209,211	-				+1.0
1,209,211	-				+0.7
1,209,211	-				+0.3
1,209,211	-				-0.9
1,209,212	+				+0.4
1,209,213	-				-0.5
1,209,241	+				-0.4
1,209,241	+				+0.9
1,209,241	+				+1.1
1,209,241	+				-0.1
1,209,241	+				+0.3
1,209,241	+				+0.0
1,209,241	+				-1.8
1,209,241	+				-0.4
1,209,241	+				+1.1
1,209,241	+				+0.5
1,209,241	+				+0.6
1,209,242	-				-0.7
1,209,242	-				-0.2
1,209,242	-				+0.1
1,209,242	-				+0.6
1,209,242	-				-0.8
1,209,242	-				+0.1
1,209,242	-				-0.1
1,209,242	-				-0.2
1,209,243	+				-0.3
1,209,243	+				+0.3
1,209,277	-				-0.9
1,209,277	-				-0.8
1,209,385	+				-1.0
1,209,385	+				-0.1
1,209,385	+				+0.2
1,209,385	+				+1.0
1,209,385	+				-0.5
1,209,385	+				+1.5
1,209,385	+				+0.5
1,209,385	+				+1.4
1,209,386	-				+1.2
1,209,386	-				-0.1
1,209,386	-				+0.6
1,209,386	-				+0.9
1,209,386	-				-0.2
1,209,386	-				+0.5
1,209,386	-				-0.3
1,209,386	-				-0.1
1,209,386	-				+1.1
1,209,392	-				-1.1
1,209,392	-				+1.3
1,209,496	+				-0.1
1,209,566	+		PP_1059	0.12	+1.1
1,209,567	-		PP_1059	0.12	-1.5
1,209,567	-		PP_1059	0.12	+0.4
1,209,567	-		PP_1059	0.12	-1.0
1,209,761	+		PP_1059	0.26	+0.5
1,209,761	+		PP_1059	0.26	-1.4
1,209,761	+		PP_1059	0.26	+0.1
1,209,762	-		PP_1059	0.26	-0.7
1,209,762	-		PP_1059	0.26	+0.4
1,209,762	-		PP_1059	0.26	-0.3