Strain Fitness in Pseudomonas putida KT2440 around PP_0755

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0753 and PP_0754 are separated by 74 nucleotidesPP_0754 and PP_0755 are separated by 67 nucleotidesPP_0755 and PP_0756 are separated by 35 nucleotides PP_0753: PP_0753 - putative Lipoprotein, at 870,568 to 871,152 _0753 PP_0754: PP_0754 - conserved protein of unknown function, at 871,227 to 871,538 _0754 PP_0755: PP_0755 - conserved protein of unknown function, at 871,606 to 871,854 _0755 PP_0756: PP_0756 - conserved protein of unknown function, at 871,890 to 873,161 _0756 Position (kb) 871 872Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 870.763 kb on + strand, within PP_0753at 870.764 kb on - strand, within PP_0753at 870.764 kb on - strand, within PP_0753at 870.764 kb on - strand, within PP_0753at 870.916 kb on + strand, within PP_0753at 870.916 kb on + strandat 870.917 kb on - strand, within PP_0753at 870.917 kb on - strand, within PP_0753at 870.917 kb on - strand, within PP_0753at 870.940 kb on + strand, within PP_0753at 870.940 kb on + strand, within PP_0753at 870.941 kb on - strand, within PP_0753at 870.941 kb on - strand, within PP_0753at 870.941 kb on - strand, within PP_0753at 870.941 kb on - strand, within PP_0753at 870.955 kb on - strand, within PP_0753at 871.003 kb on + strand, within PP_0753at 871.150 kb on + strandat 871.151 kb on - strandat 871.151 kb on - strandat 871.151 kb on - strandat 871.228 kb on + strandat 871.228 kb on + strandat 871.228 kb on + strandat 871.239 kb on + strandat 871.239 kb on + strandat 871.239 kb on + strandat 871.239 kb on + strandat 871.240 kb on - strandat 871.240 kb on - strandat 871.240 kb on - strandat 871.321 kb on + strand, within PP_0754at 871.322 kb on - strand, within PP_0754at 871.322 kb on - strand, within PP_0754at 871.322 kb on - strand, within PP_0754at 871.322 kb on - strand, within PP_0754at 871.402 kb on + strand, within PP_0754at 871.402 kb on + strand, within PP_0754at 871.403 kb on - strand, within PP_0754at 871.475 kb on + strand, within PP_0754at 871.475 kb on + strand, within PP_0754at 871.552 kb on + strandat 871.552 kb on + strandat 871.553 kb on - strandat 871.553 kb on - strandat 871.729 kb on + strand, within PP_0755at 871.730 kb on - strand, within PP_0755at 871.730 kb on - strand, within PP_0755at 871.740 kb on - strand, within PP_0755at 871.740 kb on - strand, within PP_0755at 871.783 kb on + strand, within PP_0755at 871.783 kb on + strand, within PP_0755at 871.783 kb on + strand, within PP_0755at 871.784 kb on - strand, within PP_0755at 871.789 kb on + strand, within PP_0755at 871.789 kb on + strand, within PP_0755at 871.790 kb on - strand, within PP_0755

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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870,763 + PP_0753 0.33 +0.8
870,764 - PP_0753 0.34 -2.0
870,764 - PP_0753 0.34 +0.3
870,764 - PP_0753 0.34 -3.0
870,916 + PP_0753 0.59 +0.6
870,916 + -0.6
870,917 - PP_0753 0.60 -1.2
870,917 - PP_0753 0.60 -0.4
870,917 - PP_0753 0.60 -1.2
870,940 + PP_0753 0.64 -0.1
870,940 + PP_0753 0.64 -1.3
870,941 - PP_0753 0.64 -0.9
870,941 - PP_0753 0.64 +0.6
870,941 - PP_0753 0.64 -1.0
870,941 - PP_0753 0.64 +0.6
870,955 - PP_0753 0.66 +0.3
871,003 + PP_0753 0.74 +0.9
871,150 + -2.9
871,151 - -1.3
871,151 - +0.9
871,151 - -1.7
871,228 + -0.3
871,228 + -0.6
871,228 + -1.1
871,239 + -1.9
871,239 + +0.6
871,239 + -0.6
871,239 + +0.3
871,240 - -0.5
871,240 - -1.2
871,240 - +0.1
871,321 + PP_0754 0.30 +0.2
871,322 - PP_0754 0.30 -0.2
871,322 - PP_0754 0.30 -1.2
871,322 - PP_0754 0.30 -2.6
871,322 - PP_0754 0.30 +0.3
871,402 + PP_0754 0.56 -2.3
871,402 + PP_0754 0.56 -1.7
871,403 - PP_0754 0.56 -2.9
871,475 + PP_0754 0.79 -0.1
871,475 + PP_0754 0.79 -0.4
871,552 + +0.6
871,552 + -1.6
871,553 - -2.9
871,553 - -0.8
871,729 + PP_0755 0.49 +2.8
871,730 - PP_0755 0.50 +0.0
871,730 - PP_0755 0.50 +0.0
871,740 - PP_0755 0.54 -0.3
871,740 - PP_0755 0.54 -0.4
871,783 + PP_0755 0.71 +1.2
871,783 + PP_0755 0.71 +1.3
871,783 + PP_0755 0.71 +0.7
871,784 - PP_0755 0.71 +0.2
871,789 + PP_0755 0.73 +1.3
871,789 + PP_0755 0.73 +0.5
871,790 - PP_0755 0.74 +0.0

Or see this region's nucleotide sequence