Strain Fitness in Pseudomonas putida KT2440 around PP_0235

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0234 and PP_0235 are separated by 165 nucleotidesPP_0235 and PP_0236 are separated by 219 nucleotidesPP_0236 and PP_0237 are separated by 85 nucleotides PP_0234: PP_0234 - outer-membrane porin E, at 288,582 to 289,916 _0234 PP_0235: PP_0235 - Peroxidase, at 290,082 to 290,720 _0235 PP_0236: PP_0236 - NAD(P)H-dependent FMN reductase subunit, at 290,940 to 291,533 _0236 PP_0237: PP_0237 - aliphatic sulfonate ABC transporter - periplasmic binding protein / transport of isethionate, at 291,619 to 292,584 _0237 Position (kb) 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 289.194 kb on + strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.194 kb on + strand, within PP_0234at 289.195 kb on - strand, within PP_0234at 289.195 kb on - strand, within PP_0234at 289.195 kb on - strand, within PP_0234at 289.195 kb on - strand, within PP_0234at 289.224 kb on + strand, within PP_0234at 289.224 kb on + strand, within PP_0234at 289.224 kb on + strand, within PP_0234at 289.225 kb on - strand, within PP_0234at 289.225 kb on - strand, within PP_0234at 289.225 kb on - strand, within PP_0234at 289.225 kb on - strand, within PP_0234at 289.227 kb on + strand, within PP_0234at 289.227 kb on + strand, within PP_0234at 289.227 kb on + strand, within PP_0234at 289.228 kb on - strand, within PP_0234at 289.228 kb on - strand, within PP_0234at 289.228 kb on - strand, within PP_0234at 289.230 kb on + strand, within PP_0234at 289.231 kb on - strand, within PP_0234at 289.231 kb on - strand, within PP_0234at 289.231 kb on - strand, within PP_0234at 289.231 kb on - strand, within PP_0234at 289.251 kb on + strand, within PP_0234at 289.251 kb on + strand, within PP_0234at 289.252 kb on - strand, within PP_0234at 289.252 kb on - strand, within PP_0234at 289.282 kb on + strand, within PP_0234at 289.283 kb on - strand, within PP_0234at 289.283 kb on - strand, within PP_0234at 289.283 kb on - strand, within PP_0234at 289.327 kb on - strand, within PP_0234at 289.369 kb on - strand, within PP_0234at 289.446 kb on + strand, within PP_0234at 289.447 kb on - strand, within PP_0234at 289.447 kb on - strand, within PP_0234at 289.526 kb on + strand, within PP_0234at 289.526 kb on + strand, within PP_0234at 289.526 kb on + strand, within PP_0234at 289.527 kb on - strand, within PP_0234at 289.527 kb on - strand, within PP_0234at 289.585 kb on - strand, within PP_0234at 289.598 kb on + strand, within PP_0234at 289.599 kb on - strand, within PP_0234at 289.635 kb on - strand, within PP_0234at 289.635 kb on - strand, within PP_0234at 289.635 kb on - strand, within PP_0234at 289.635 kb on - strand, within PP_0234at 289.656 kb on + strand, within PP_0234at 289.657 kb on - strand, within PP_0234at 289.657 kb on - strand, within PP_0234at 289.705 kb on - strand, within PP_0234at 289.705 kb on - strand, within PP_0234at 289.896 kb on + strandat 289.896 kb on + strandat 289.896 kb on + strandat 289.896 kb on + strandat 289.897 kb on - strandat 289.897 kb on - strandat 289.897 kb on - strandat 289.902 kb on + strandat 289.902 kb on + strandat 289.902 kb on + strandat 289.902 kb on + strandat 289.903 kb on - strandat 289.903 kb on - strandat 289.921 kb on + strandat 289.921 kb on + strandat 289.974 kb on - strandat 290.048 kb on + strandat 290.048 kb on + strandat 290.049 kb on - strandat 290.049 kb on - strandat 290.348 kb on + strand, within PP_0235at 290.349 kb on - strand, within PP_0235at 290.404 kb on - strand, within PP_0235at 290.404 kb on - strand, within PP_0235at 290.471 kb on + strand, within PP_0235at 290.472 kb on - strand, within PP_0235at 290.493 kb on - strand, within PP_0235at 290.493 kb on - strand, within PP_0235at 290.688 kb on + strandat 290.689 kb on - strandat 290.745 kb on - strandat 290.903 kb on + strandat 290.904 kb on - strandat 291.294 kb on + strand, within PP_0236at 291.406 kb on + strand, within PP_0236at 291.407 kb on - strand, within PP_0236at 291.407 kb on - strand, within PP_0236at 291.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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289,194 + PP_0234 0.46 -1.5
289,194 + PP_0234 0.46 +0.3
289,194 + PP_0234 0.46 -0.1
289,194 + PP_0234 0.46 -0.7
289,194 + PP_0234 0.46 -1.9
289,195 - PP_0234 0.46 +0.0
289,195 - PP_0234 0.46 -0.7
289,195 - PP_0234 0.46 -0.8
289,195 - PP_0234 0.46 -0.5
289,224 + PP_0234 0.48 -1.8
289,224 + PP_0234 0.48 -0.2
289,224 + PP_0234 0.48 -0.2
289,225 - PP_0234 0.48 -3.0
289,225 - PP_0234 0.48 -0.0
289,225 - PP_0234 0.48 -0.7
289,225 - PP_0234 0.48 -1.0
289,227 + PP_0234 0.48 +0.1
289,227 + PP_0234 0.48 -0.9
289,227 + PP_0234 0.48 +1.8
289,228 - PP_0234 0.48 -0.6
289,228 - PP_0234 0.48 +1.3
289,228 - PP_0234 0.48 +0.2
289,230 + PP_0234 0.49 -1.0
289,231 - PP_0234 0.49 -1.2
289,231 - PP_0234 0.49 -0.7
289,231 - PP_0234 0.49 -0.5
289,231 - PP_0234 0.49 -0.1
289,251 + PP_0234 0.50 +0.1
289,251 + PP_0234 0.50 -0.4
289,252 - PP_0234 0.50 +0.1
289,252 - PP_0234 0.50 -0.3
289,282 + PP_0234 0.52 +1.1
289,283 - PP_0234 0.53 -2.9
289,283 - PP_0234 0.53 -2.3
289,283 - PP_0234 0.53 +2.2
289,327 - PP_0234 0.56 -0.4
289,369 - PP_0234 0.59 -1.3
289,446 + PP_0234 0.65 -0.3
289,447 - PP_0234 0.65 -1.5
289,447 - PP_0234 0.65 +0.3
289,526 + PP_0234 0.71 -2.0
289,526 + PP_0234 0.71 -1.6
289,526 + PP_0234 0.71 -1.9
289,527 - PP_0234 0.71 -0.1
289,527 - PP_0234 0.71 -0.5
289,585 - PP_0234 0.75 -0.7
289,598 + PP_0234 0.76 +0.1
289,599 - PP_0234 0.76 -0.5
289,635 - PP_0234 0.79 -1.6
289,635 - PP_0234 0.79 +0.2
289,635 - PP_0234 0.79 -2.6
289,635 - PP_0234 0.79 -0.4
289,656 + PP_0234 0.80 -1.3
289,657 - PP_0234 0.81 -0.2
289,657 - PP_0234 0.81 -0.5
289,705 - PP_0234 0.84 -0.6
289,705 - PP_0234 0.84 +0.4
289,896 + +1.3
289,896 + +0.0
289,896 + +0.6
289,896 + -0.7
289,897 - -0.0
289,897 - -0.6
289,897 - -1.5
289,902 + -0.5
289,902 + -2.6
289,902 + -0.3
289,902 + -1.7
289,903 - +1.2
289,903 - -1.9
289,921 + -1.7
289,921 + +0.4
289,974 - -0.6
290,048 + -0.2
290,048 + +0.8
290,049 - -2.7
290,049 - +0.9
290,348 + PP_0235 0.42 -1.8
290,349 - PP_0235 0.42 +0.3
290,404 - PP_0235 0.50 +1.6
290,404 - PP_0235 0.50 -1.5
290,471 + PP_0235 0.61 -0.0
290,472 - PP_0235 0.61 -0.6
290,493 - PP_0235 0.64 -0.8
290,493 - PP_0235 0.64 +0.5
290,688 + -1.9
290,689 - -0.6
290,745 - +0.1
290,903 + -0.5
290,904 - +1.3
291,294 + PP_0236 0.60 -2.7
291,406 + PP_0236 0.78 -0.3
291,407 - PP_0236 0.79 -0.9
291,407 - PP_0236 0.79 -1.5
291,558 + +0.2

Or see this region's nucleotide sequence