Strain Fitness in Pseudomonas putida KT2440 around PP_0138

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0137 and PP_0138 are separated by 147 nucleotidesPP_0138 and PP_0139 overlap by 19 nucleotidesPP_0139 and PP_0140 overlap by 4 nucleotides PP_0137: PP_0137 - glutamate/aspartate-proton DAACS transporter, at 144,767 to 146,095 _0137 PP_0138: PP_0138 - conserved membrane protein of unknown function, at 146,243 to 147,472 _0138 PP_0139: PP_0139 - putative Lipoprotein, at 147,454 to 148,089 _0139 PP_0140: PP_0140 - conserved protein of unknown function, at 148,086 to 149,024 _0140 Position (kb) 146 147 148Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 145.324 kb on + strand, within PP_0137at 145.380 kb on - strand, within PP_0137at 145.380 kb on - strand, within PP_0137at 145.380 kb on - strand, within PP_0137at 145.475 kb on + strand, within PP_0137at 145.475 kb on + strand, within PP_0137at 145.475 kb on + strand, within PP_0137at 145.476 kb on - strand, within PP_0137at 145.476 kb on - strand, within PP_0137at 145.506 kb on + strand, within PP_0137at 145.586 kb on + strand, within PP_0137at 145.586 kb on + strand, within PP_0137at 145.643 kb on + strand, within PP_0137at 145.701 kb on + strand, within PP_0137at 145.702 kb on - strand, within PP_0137at 145.718 kb on + strand, within PP_0137at 145.719 kb on - strand, within PP_0137at 145.754 kb on + strand, within PP_0137at 145.754 kb on + strand, within PP_0137at 145.842 kb on + strand, within PP_0137at 145.842 kb on + strand, within PP_0137at 145.943 kb on - strand, within PP_0137at 145.943 kb on - strand, within PP_0137at 146.006 kb on + strandat 146.006 kb on + strandat 146.006 kb on + strandat 146.007 kb on - strandat 146.007 kb on - strandat 146.007 kb on - strandat 146.030 kb on + strandat 146.031 kb on - strandat 146.031 kb on - strandat 146.033 kb on + strandat 146.034 kb on - strandat 146.034 kb on - strandat 146.067 kb on + strandat 146.067 kb on + strandat 146.204 kb on + strandat 146.238 kb on + strandat 146.238 kb on + strandat 146.238 kb on + strandat 146.238 kb on + strandat 146.238 kb on + strandat 146.239 kb on - strandat 146.239 kb on - strandat 146.239 kb on - strandat 146.239 kb on - strandat 146.239 kb on - strandat 146.239 kb on - strandat 146.239 kb on - strandat 146.585 kb on - strand, within PP_0138at 146.721 kb on - strand, within PP_0138at 146.861 kb on + strand, within PP_0138at 146.861 kb on + strand, within PP_0138at 146.861 kb on + strand, within PP_0138at 146.862 kb on - strand, within PP_0138at 146.862 kb on - strandat 146.862 kb on - strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.023 kb on + strand, within PP_0138at 147.024 kb on - strand, within PP_0138at 147.024 kb on - strand, within PP_0138at 147.024 kb on - strand, within PP_0138at 147.024 kb on - strand, within PP_0138at 147.083 kb on + strand, within PP_0138at 147.083 kb on + strand, within PP_0138at 147.170 kb on - strand, within PP_0138at 147.170 kb on - strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.345 kb on - strand, within PP_0138at 147.345 kb on - strand, within PP_0138at 147.348 kb on + strand, within PP_0138at 147.348 kb on + strand, within PP_0138at 147.359 kb on + strandat 147.455 kb on + strandat 147.571 kb on + strand, within PP_0139at 147.571 kb on + strand, within PP_0139at 147.660 kb on - strand, within PP_0139at 147.734 kb on + strand, within PP_0139at 147.735 kb on - strand, within PP_0139at 147.735 kb on - strand, within PP_0139at 147.750 kb on + strand, within PP_0139at 147.750 kb on + strand, within PP_0139at 147.751 kb on - strand, within PP_0139at 147.751 kb on - strand, within PP_0139at 147.775 kb on + strandat 147.857 kb on + strand, within PP_0139at 147.858 kb on - strand, within PP_0139at 148.126 kb on + strandat 148.268 kb on + strand, within PP_0140at 148.269 kb on - strand, within PP_0140at 148.269 kb on - strand, within PP_0140

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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145,324 + PP_0137 0.42 -0.2
145,380 - PP_0137 0.46 +1.1
145,380 - PP_0137 0.46 -0.5
145,380 - PP_0137 0.46 -2.0
145,475 + PP_0137 0.53 +0.3
145,475 + PP_0137 0.53 +0.0
145,475 + PP_0137 0.53 +0.7
145,476 - PP_0137 0.53 +0.5
145,476 - PP_0137 0.53 +0.3
145,506 + PP_0137 0.56 +0.8
145,586 + PP_0137 0.62 +0.5
145,586 + PP_0137 0.62 +0.5
145,643 + PP_0137 0.66 -0.5
145,701 + PP_0137 0.70 -0.2
145,702 - PP_0137 0.70 -0.3
145,718 + PP_0137 0.72 +0.9
145,719 - PP_0137 0.72 +0.6
145,754 + PP_0137 0.74 +0.2
145,754 + PP_0137 0.74 -1.6
145,842 + PP_0137 0.81 -1.5
145,842 + PP_0137 0.81 +0.7
145,943 - PP_0137 0.88 -0.0
145,943 - PP_0137 0.88 +1.5
146,006 + -0.1
146,006 + +0.0
146,006 + -0.7
146,007 - +0.9
146,007 - +0.9
146,007 - +0.2
146,030 + +0.0
146,031 - -0.0
146,031 - +0.7
146,033 + +0.5
146,034 - +0.8
146,034 - -0.3
146,067 + -0.1
146,067 + +0.6
146,204 + -0.3
146,238 + +2.0
146,238 + +2.1
146,238 + +2.4
146,238 + +2.9
146,238 + +1.3
146,239 - +1.4
146,239 - +1.0
146,239 - +2.4
146,239 - +2.7
146,239 - +1.7
146,239 - +0.2
146,239 - +2.3
146,585 - PP_0138 0.28 +2.0
146,721 - PP_0138 0.39 +1.7
146,861 + PP_0138 0.50 +1.9
146,861 + PP_0138 0.50 +2.0
146,861 + PP_0138 0.50 +1.8
146,862 - PP_0138 0.50 +1.4
146,862 - +2.4
146,862 - PP_0138 0.50 +1.8
147,023 + PP_0138 0.63 +1.0
147,023 + PP_0138 0.63 +1.8
147,023 + PP_0138 0.63 +1.7
147,023 + PP_0138 0.63 +1.5
147,023 + PP_0138 0.63 +2.2
147,023 + PP_0138 0.63 +2.0
147,024 - PP_0138 0.63 +2.5
147,024 - PP_0138 0.63 +1.7
147,024 - PP_0138 0.63 +2.4
147,024 - PP_0138 0.63 +2.3
147,083 + PP_0138 0.68 +1.9
147,083 + PP_0138 0.68 +1.2
147,170 - PP_0138 0.75 +1.3
147,170 - PP_0138 0.75 +1.9
147,344 + PP_0138 0.90 +1.7
147,344 + PP_0138 0.90 +1.6
147,344 + PP_0138 0.90 +2.0
147,344 + PP_0138 0.90 +2.2
147,344 + PP_0138 0.90 +0.9
147,344 + PP_0138 0.90 +2.0
147,345 - PP_0138 0.90 +3.0
147,345 - PP_0138 0.90 +2.0
147,348 + PP_0138 0.90 +2.0
147,348 + PP_0138 0.90 +1.8
147,359 + +1.9
147,455 + +1.5
147,571 + PP_0139 0.18 +0.9
147,571 + PP_0139 0.18 +0.0
147,660 - PP_0139 0.32 +0.1
147,734 + PP_0139 0.44 -0.3
147,735 - PP_0139 0.44 -1.2
147,735 - PP_0139 0.44 +0.1
147,750 + PP_0139 0.47 -0.0
147,750 + PP_0139 0.47 -0.3
147,751 - PP_0139 0.47 +1.5
147,751 - PP_0139 0.47 +1.2
147,775 + +1.0
147,857 + PP_0139 0.63 -2.9
147,858 - PP_0139 0.64 +0.6
148,126 + +0.1
148,268 + PP_0140 0.19 -2.3
148,269 - PP_0140 0.19 -1.2
148,269 - PP_0140 0.19 -0.2

Or see this region's nucleotide sequence