Strain Fitness in Pseudomonas putida KT2440 around PP_0122
Experiment: R2A with Fusaric 240 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 240 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 126,345 | + | -1.5 | |||
| 126,629 | + | -1.9 | |||
| 127,162 | - | -0.5 | |||
| 127,291 | - | PP_0122 | 0.45 | -0.7 | |
| 127,291 | - | PP_0122 | 0.45 | -1.0 | |
| 127,312 | - | PP_0122 | 0.53 | -0.5 | |
| 127,327 | + | PP_0122 | 0.58 | -0.0 | |
| 127,328 | - | PP_0122 | 0.58 | -0.8 | |
| 127,424 | + | -1.0 | |||
| 127,425 | - | +0.8 | |||
| 127,450 | + | -0.6 | |||
| 127,455 | + | +0.5 | |||
| 127,455 | + | +0.8 | |||
| 127,455 | + | -0.6 | |||
| 127,456 | - | -1.6 |
Or see this region's nucleotide sequence