Strain Fitness in Pseudomonas putida KT2440 around PP_0025

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0024 and PP_0025 are separated by 442 nucleotidesPP_0025 and PP_0026 are separated by 288 nucleotides PP_0024: PP_0024 - putative membrane-associated metal-dependent hydrolase, at 27,850 to 29,547 _0024 PP_0025: PP_0025 - hypothetical protein, at 29,990 to 30,142 _0025 PP_0026: PP_0026 - putative cobalt/cadmium/zinc exporter, at 30,431 to 31,336 _0026 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.999 kb on + strand, within PP_0024at 28.999 kb on + strand, within PP_0024at 29.000 kb on - strand, within PP_0024at 29.000 kb on - strand, within PP_0024at 29.090 kb on + strand, within PP_0024at 29.090 kb on + strand, within PP_0024at 29.091 kb on - strand, within PP_0024at 29.195 kb on + strand, within PP_0024at 29.196 kb on - strand, within PP_0024at 29.229 kb on - strand, within PP_0024at 29.229 kb on - strand, within PP_0024at 29.255 kb on - strand, within PP_0024at 29.266 kb on + strand, within PP_0024at 29.267 kb on - strand, within PP_0024at 29.311 kb on - strand, within PP_0024at 29.327 kb on - strand, within PP_0024at 29.327 kb on - strand, within PP_0024at 29.327 kb on - strand, within PP_0024at 29.327 kb on - strand, within PP_0024at 29.329 kb on + strand, within PP_0024at 29.329 kb on + strand, within PP_0024at 29.330 kb on - strand, within PP_0024at 29.381 kb on - strandat 29.453 kb on - strandat 29.569 kb on + strandat 29.582 kb on - strandat 29.586 kb on - strandat 29.586 kb on - strandat 29.586 kb on - strandat 29.593 kb on + strandat 29.603 kb on + strandat 29.604 kb on - strandat 29.689 kb on + strandat 29.689 kb on + strandat 29.692 kb on + strandat 29.692 kb on + strandat 29.693 kb on - strandat 29.711 kb on + strandat 29.854 kb on + strandat 29.855 kb on - strandat 29.857 kb on + strandat 29.891 kb on - strandat 30.009 kb on - strand, within PP_0025at 30.131 kb on + strandat 30.132 kb on - strandat 30.170 kb on - strandat 30.179 kb on + strandat 30.179 kb on + strandat 30.179 kb on + strandat 30.179 kb on + strandat 30.179 kb on + strandat 30.180 kb on - strandat 30.180 kb on - strandat 30.374 kb on + strandat 30.374 kb on + strandat 30.374 kb on + strandat 30.375 kb on - strandat 30.375 kb on - strandat 30.375 kb on - strandat 30.381 kb on - strandat 30.381 kb on - strandat 30.381 kb on - strandat 30.381 kb on - strandat 30.384 kb on + strandat 30.384 kb on + strandat 30.384 kb on + strandat 30.384 kb on + strandat 30.385 kb on - strandat 30.385 kb on - strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.428 kb on + strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.465 kb on + strandat 30.490 kb on - strandat 30.490 kb on - strandat 30.599 kb on - strand, within PP_0026at 30.599 kb on - strand, within PP_0026at 30.659 kb on - strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.737 kb on + strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.738 kb on - strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.746 kb on + strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.747 kb on - strand, within PP_0026at 30.834 kb on + strand, within PP_0026at 30.835 kb on - strand, within PP_0026at 30.835 kb on - strand, within PP_0026at 30.893 kb on + strand, within PP_0026at 30.893 kb on + strand, within PP_0026at 30.894 kb on - strand, within PP_0026at 30.894 kb on - strand, within PP_0026at 30.933 kb on + strand, within PP_0026at 30.934 kb on - strandat 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.949 kb on + strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 30.950 kb on - strand, within PP_0026at 31.119 kb on + strand, within PP_0026at 31.119 kb on + strand, within PP_0026at 31.120 kb on - strand, within PP_0026at 31.120 kb on - strand, within PP_0026

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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28,999 + PP_0024 0.68 -0.0
28,999 + PP_0024 0.68 +0.5
29,000 - PP_0024 0.68 -0.3
29,000 - PP_0024 0.68 -0.1
29,090 + PP_0024 0.73 +0.9
29,090 + PP_0024 0.73 +0.5
29,091 - PP_0024 0.73 -0.3
29,195 + PP_0024 0.79 +0.8
29,196 - PP_0024 0.79 -0.3
29,229 - PP_0024 0.81 +0.3
29,229 - PP_0024 0.81 +0.0
29,255 - PP_0024 0.83 -0.4
29,266 + PP_0024 0.83 -2.8
29,267 - PP_0024 0.83 -0.6
29,311 - PP_0024 0.86 +0.4
29,327 - PP_0024 0.87 +0.7
29,327 - PP_0024 0.87 +0.5
29,327 - PP_0024 0.87 +0.2
29,327 - PP_0024 0.87 +0.1
29,329 + PP_0024 0.87 -1.8
29,329 + PP_0024 0.87 +0.0
29,330 - PP_0024 0.87 -0.5
29,381 - +0.3
29,453 - -0.1
29,569 + +0.4
29,582 - +0.2
29,586 - +0.6
29,586 - +0.2
29,586 - -0.6
29,593 + +0.3
29,603 + -0.2
29,604 - +0.5
29,689 + -1.0
29,689 + +2.6
29,692 + +0.3
29,692 + +0.5
29,693 - -1.4
29,711 + +0.6
29,854 + +0.2
29,855 - -0.7
29,857 + +1.2
29,891 - +0.2
30,009 - PP_0025 0.12 +0.6
30,131 + +0.9
30,132 - +0.4
30,170 - -2.3
30,179 + -1.0
30,179 + -1.2
30,179 + +0.8
30,179 + -0.4
30,179 + +0.1
30,180 - +0.8
30,180 - -2.1
30,374 + +0.3
30,374 + -0.2
30,374 + +2.3
30,375 - +0.1
30,375 - +0.1
30,375 - -0.7
30,381 - -1.8
30,381 - -1.3
30,381 - +0.9
30,381 - +0.1
30,384 + -0.9
30,384 + -0.6
30,384 + -0.1
30,384 + +0.5
30,385 - -0.2
30,385 - +0.3
30,428 + +0.0
30,428 + +1.0
30,428 + -1.1
30,428 + -2.9
30,428 + +1.9
30,428 + -1.2
30,429 - +0.4
30,429 - -0.5
30,429 - +0.4
30,429 - -0.6
30,429 - -1.3
30,465 + -0.9
30,490 - +0.9
30,490 - -0.5
30,599 - PP_0026 0.19 +0.5
30,599 - PP_0026 0.19 -1.4
30,659 - PP_0026 0.25 -0.7
30,737 + PP_0026 0.34 +0.6
30,737 + PP_0026 0.34 -0.6
30,737 + PP_0026 0.34 -1.8
30,737 + PP_0026 0.34 +1.2
30,738 - PP_0026 0.34 +0.6
30,738 - PP_0026 0.34 -1.1
30,738 - PP_0026 0.34 -0.1
30,738 - PP_0026 0.34 -1.3
30,738 - PP_0026 0.34 -1.5
30,738 - PP_0026 0.34 +1.5
30,738 - PP_0026 0.34 +0.4
30,746 + PP_0026 0.35 +0.3
30,746 + PP_0026 0.35 +0.4
30,746 + PP_0026 0.35 -0.1
30,746 + PP_0026 0.35 -0.7
30,747 - PP_0026 0.35 -0.2
30,747 - PP_0026 0.35 -0.4
30,747 - PP_0026 0.35 -0.0
30,747 - PP_0026 0.35 -0.5
30,747 - PP_0026 0.35 -0.5
30,747 - PP_0026 0.35 +1.3
30,747 - PP_0026 0.35 +0.1
30,747 - PP_0026 0.35 -0.4
30,747 - PP_0026 0.35 +0.7
30,834 + PP_0026 0.44 -1.5
30,835 - PP_0026 0.45 -0.3
30,835 - PP_0026 0.45 +1.4
30,893 + PP_0026 0.51 +0.0
30,893 + PP_0026 0.51 -0.2
30,894 - PP_0026 0.51 -0.2
30,894 - PP_0026 0.51 +0.1
30,933 + PP_0026 0.55 -0.1
30,934 - +0.8
30,949 + PP_0026 0.57 +1.0
30,949 + PP_0026 0.57 -2.5
30,949 + PP_0026 0.57 -0.2
30,949 + PP_0026 0.57 -0.0
30,950 - PP_0026 0.57 +0.4
30,950 - PP_0026 0.57 -0.6
30,950 - PP_0026 0.57 -0.4
30,950 - PP_0026 0.57 -1.4
30,950 - PP_0026 0.57 -0.9
30,950 - PP_0026 0.57 -0.6
30,950 - PP_0026 0.57 -1.6
30,950 - PP_0026 0.57 -1.7
31,119 + PP_0026 0.76 -1.2
31,119 + PP_0026 0.76 +0.5
31,120 - PP_0026 0.76 +1.1
31,120 - PP_0026 0.76 -0.3

Or see this region's nucleotide sequence