Strain Fitness in Pseudomonas putida KT2440 around PP_3815

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,340,743	-		PP_3814	0.39	-1.3
4,340,743	-		PP_3814	0.39	+0.6
4,340,829	+		PP_3814	0.47	+0.4
4,340,881	+		PP_3814	0.52	-0.6
4,340,882	-		PP_3814	0.52	+0.4
4,341,039	+		PP_3814	0.68	+0.5
4,341,039	+		PP_3814	0.68	-0.1
4,341,407	-				-0.8
4,341,584	+		PP_3815	0.24	-0.2
4,341,584	+		PP_3815	0.24	+0.4
4,341,585	-		PP_3815	0.24	-2.2
4,341,585	-		PP_3815	0.24	-0.9
4,341,585	-		PP_3815	0.24	+0.0
4,341,612	-		PP_3815	0.27	+1.5
4,341,783	-		PP_3815	0.45	-1.0
4,341,905	+		PP_3815	0.58	-1.7
4,341,905	+		PP_3815	0.58	-2.4
4,341,905	+		PP_3815	0.58	+0.3
4,341,906	-		PP_3815	0.59	+0.1
4,341,906	-		PP_3815	0.59	-1.7
4,341,906	-		PP_3815	0.59	-1.5
4,341,906	-		PP_3815	0.59	+0.2
4,341,906	-		PP_3815	0.59	+0.7
4,342,094	+		PP_3815	0.79	+0.2
4,342,094	+		PP_3815	0.79	+1.1
4,342,094	+		PP_3815	0.79	-0.6
4,342,094	+		PP_3815	0.79	-2.9
4,342,094	+		PP_3815	0.79	+0.1
4,342,094	+		PP_3815	0.79	-0.7
4,342,095	-		PP_3815	0.79	-1.2
4,342,095	-				-0.4
4,342,095	-		PP_3815	0.79	+0.3
4,342,095	-		PP_3815	0.79	-1.9
4,342,095	-		PP_3815	0.79	-3.4
4,342,212	+				-0.7
4,342,235	+				-0.3
4,342,235	+				+1.0
4,342,235	+				-1.1
4,342,236	-				-0.3
4,342,241	+				-3.6
4,342,242	-				-0.8
4,342,283	+				-1.6
4,342,283	+				+0.8
4,342,331	-				+0.3
4,342,340	+				+0.7
4,342,340	+				-0.1
4,342,341	-				-0.4
4,342,461	-		PP_3816	0.21	+0.9
4,342,461	-		PP_3816	0.21	+0.4
4,342,610	+		PP_3816	0.39	+0.3
4,342,610	+		PP_3816	0.39	-3.0
4,342,611	-		PP_3816	0.39	+0.7
4,342,611	-		PP_3816	0.39	+1.0
4,342,621	+		PP_3816	0.41	+1.2
4,342,622	-		PP_3816	0.41	+0.6
4,342,622	-		PP_3816	0.41	+0.4
4,342,667	+		PP_3816	0.46	-1.0
4,342,667	+		PP_3816	0.46	-0.8
4,342,667	+		PP_3816	0.46	-0.6
4,342,667	+		PP_3816	0.46	-0.5
4,342,667	+		PP_3816	0.46	-3.8
4,342,667	+		PP_3816	0.46	+0.9
4,342,668	-		PP_3816	0.46	+0.4
4,342,668	-		PP_3816	0.46	-0.1
4,342,668	-		PP_3816	0.46	+0.6
4,342,668	-		PP_3816	0.46	+0.3
4,342,668	-		PP_3816	0.46	+0.1
4,342,686	+		PP_3816	0.49	+0.8
4,342,686	+				-0.8
4,342,686	+		PP_3816	0.49	+0.5
4,342,687	-		PP_3816	0.49	+0.4
4,342,687	-		PP_3816	0.49	-0.1
4,342,691	+		PP_3816	0.49	-0.6
4,342,692	-		PP_3816	0.49	-1.5
4,343,113	+				-0.1
4,343,191	-				+1.3
4,343,191	-				-2.4