Strain Fitness in Pseudomonas putida KT2440 around PP_3720

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,242,104	-		PP_3719	0.34	+0.2
4,242,160	+		PP_3719	0.39	+0.1
4,242,160	+		PP_3719	0.39	+0.2
4,242,183	+		PP_3719	0.41	-1.1
4,242,183	+				+1.7
4,242,183	+		PP_3719	0.41	-2.2
4,242,183	+		PP_3719	0.41	+1.6
4,242,183	+		PP_3719	0.41	-1.0
4,242,183	+		PP_3719	0.41	-0.4
4,242,184	-		PP_3719	0.41	-2.9
4,242,184	-		PP_3719	0.41	-1.3
4,242,187	+		PP_3719	0.41	+0.2
4,242,187	+		PP_3719	0.41	+0.1
4,242,188	-		PP_3719	0.41	-0.0
4,242,188	-		PP_3719	0.41	+1.2
4,242,188	-		PP_3719	0.41	+0.5
4,242,188	-		PP_3719	0.41	+0.7
4,242,188	-		PP_3719	0.41	+1.2
4,242,188	-		PP_3719	0.41	-1.4
4,242,188	-		PP_3719	0.41	+0.8
4,242,188	-		PP_3719	0.41	-0.2
4,242,188	-		PP_3719	0.41	+0.8
4,242,188	-		PP_3719	0.41	-0.3
4,242,265	+		PP_3719	0.48	+0.6
4,242,266	-		PP_3719	0.48	+0.0
4,242,415	+		PP_3719	0.62	-0.8
4,242,416	-		PP_3719	0.62	+0.4
4,242,416	-		PP_3719	0.62	-1.4
4,242,416	-		PP_3719	0.62	-0.7
4,242,416	-		PP_3719	0.62	-0.1
4,242,442	+		PP_3719	0.64	-0.9
4,242,442	+		PP_3719	0.64	+0.3
4,242,443	-		PP_3719	0.64	-2.5
4,242,455	-		PP_3719	0.65	-3.3
4,242,455	-		PP_3719	0.65	-0.6
4,242,455	-		PP_3719	0.65	+1.0
4,242,647	-		PP_3719	0.83	-1.2
4,242,647	-		PP_3719	0.83	+0.8
4,242,664	+		PP_3719	0.84	+0.3
4,242,664	+		PP_3719	0.84	+0.8
4,242,665	-		PP_3719	0.84	-0.3
4,242,665	-		PP_3719	0.84	+0.5
4,242,721	+		PP_3719	0.89	-1.1
4,242,722	-		PP_3719	0.90	-0.7
4,242,722	-		PP_3719	0.90	-0.0
4,242,737	-				+1.2
4,242,745	-				-0.1
4,242,745	-				+0.3
4,242,753	-				+1.1
4,242,825	+				-0.2
4,242,825	+				+0.4
4,242,826	-				-0.7
4,242,826	-				-2.7
4,242,883	+				+0.7
4,242,911	-				-1.2
4,242,972	+				-2.9
4,242,973	-				-0.1
4,242,973	-				-0.3
4,243,018	-				-1.7
4,243,161	-		PP_3720	0.19	-1.4
4,243,161	-		PP_3720	0.19	+0.0
4,243,208	+		PP_3720	0.25	-0.9
4,243,209	-		PP_3720	0.25	-1.3
4,243,209	-		PP_3720	0.25	-1.4
4,243,209	-		PP_3720	0.25	-0.8
4,243,209	-		PP_3720	0.25	-1.6
4,243,209	-		PP_3720	0.25	+0.1
4,243,209	-		PP_3720	0.25	-1.4
4,243,346	+		PP_3720	0.45	+0.3
4,243,364	+		PP_3720	0.47	+0.2
4,243,365	-		PP_3720	0.47	-1.2
4,243,541	+		PP_3720	0.72	+0.4
4,243,542	-		PP_3720	0.72	+0.6
4,243,550	+		PP_3720	0.73	-1.1
4,243,551	-		PP_3720	0.74	-0.4
4,243,572	+		PP_3720	0.77	-0.8
4,243,613	+		PP_3720	0.82	-2.8
4,243,613	+		PP_3720	0.82	+0.8
4,243,613	+		PP_3720	0.82	-1.0
4,243,613	+		PP_3720	0.82	-0.1
4,243,613	+		PP_3720	0.82	-0.4
4,243,614	-		PP_3720	0.82	-1.3
4,243,614	-		PP_3720	0.82	-1.0
4,243,614	-		PP_3720	0.82	-1.1
4,243,614	-		PP_3720	0.82	-0.4
4,243,724	-				+0.4
4,243,724	-				-0.7
4,243,759	-				-2.2
4,243,759	-				-0.8
4,243,813	+				-1.2
4,243,814	-				-0.5
4,243,814	-				-0.2
4,243,999	+		PP_3721	0.14	-2.2
4,243,999	+		PP_3721	0.14	+0.6
4,244,386	+		PP_3721	0.47	-0.3
4,244,387	-		PP_3721	0.47	+0.7
4,244,402	-		PP_3721	0.48	-1.6
4,244,635	+		PP_3721	0.68	-0.6
4,244,636	-		PP_3721	0.68	+0.9
4,244,644	+		PP_3721	0.68	+0.6
4,244,644	+		PP_3721	0.68	-0.3
4,244,644	+		PP_3721	0.68	-1.4
4,244,644	+				+0.4
4,244,644	+		PP_3721	0.68	-2.7
4,244,644	+		PP_3721	0.68	-1.1
4,244,645	-		PP_3721	0.68	+0.0
4,244,645	-		PP_3721	0.68	-0.5
4,244,645	-		PP_3721	0.68	-0.3
4,244,645	-		PP_3721	0.68	-2.0
4,244,685	+		PP_3721	0.72	+0.8
4,244,686	-		PP_3721	0.72	-0.5
4,244,705	-		PP_3721	0.73	+0.5
4,244,705	-		PP_3721	0.73	+1.0
4,244,705	-		PP_3721	0.73	+0.2