Experiment: R2A with Fusaric 240 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3564 and PP_3565 are separated by 104 nucleotides PP_3565 and PP_3566 are separated by 48 nucleotides
PP_3564: PP_3564 - Transcriptional regulator, AraC family, at 4,042,766 to 4,043,743
_3564
PP_3565: PP_3565 - Transporter, LysE family, at 4,043,848 to 4,044,459
_3565
PP_3566: PP_3566 - Major facilitator family transporter, at 4,044,508 to 4,045,707
_3566
Position (kb) 4043
4044
4045 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4043.207 kb on + strand, within PP_3564 at 4043.208 kb on - strand, within PP_3564 at 4043.208 kb on - strand, within PP_3564 at 4043.225 kb on + strand, within PP_3564 at 4043.226 kb on - strand, within PP_3564 at 4043.274 kb on + strand, within PP_3564 at 4043.274 kb on + strand, within PP_3564 at 4043.275 kb on - strand, within PP_3564 at 4043.519 kb on + strand, within PP_3564 at 4043.520 kb on - strand, within PP_3564 at 4043.637 kb on + strand, within PP_3564 at 4043.780 kb on + strand at 4043.781 kb on - strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.811 kb on - strand at 4043.811 kb on - strand at 4043.811 kb on - strand at 4043.872 kb on + strand at 4043.872 kb on + strand at 4043.872 kb on + strand at 4043.873 kb on - strand at 4043.947 kb on + strand, within PP_3565 at 4043.948 kb on - strand, within PP_3565 at 4044.091 kb on + strand, within PP_3565 at 4044.116 kb on + strand, within PP_3565 at 4044.117 kb on - strand, within PP_3565 at 4044.117 kb on - strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.236 kb on - strand, within PP_3565 at 4044.236 kb on - strand, within PP_3565 at 4044.659 kb on + strand, within PP_3566 at 4044.659 kb on + strand, within PP_3566 at 4044.659 kb on + strand, within PP_3566 at 4044.660 kb on - strand, within PP_3566 at 4044.701 kb on + strand, within PP_3566 at 4044.701 kb on + strand, within PP_3566 at 4044.702 kb on - strand, within PP_3566 at 4044.702 kb on - strand, within PP_3566 at 4044.899 kb on - strand, within PP_3566 at 4044.899 kb on - strand, within PP_3566 at 4044.992 kb on + strand, within PP_3566 at 4045.025 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.269 kb on + strand, within PP_3566 at 4045.418 kb on - strand, within PP_3566 at 4045.418 kb on - strand, within PP_3566
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL remove 4,043,207 + PP_3564 0.45 +0.3 4,043,208 - PP_3564 0.45 +0.5 4,043,208 - PP_3564 0.45 -3.6 4,043,225 + PP_3564 0.47 +0.6 4,043,226 - PP_3564 0.47 +0.3 4,043,274 + PP_3564 0.52 -1.4 4,043,274 + PP_3564 0.52 +0.7 4,043,275 - PP_3564 0.52 -0.2 4,043,519 + PP_3564 0.77 -0.7 4,043,520 - PP_3564 0.77 -0.3 4,043,637 + PP_3564 0.89 -0.4 4,043,780 + -0.1 4,043,781 - -0.5 4,043,810 + +0.8 4,043,810 + -0.6 4,043,810 + +1.6 4,043,810 + +0.5 4,043,811 - +2.1 4,043,811 - +0.3 4,043,811 - -3.0 4,043,872 + +0.3 4,043,872 + -0.8 4,043,872 + -0.9 4,043,873 - -0.8 4,043,947 + PP_3565 0.16 -0.3 4,043,948 - PP_3565 0.16 +3.0 4,044,091 + PP_3565 0.40 -0.9 4,044,116 + PP_3565 0.44 -0.5 4,044,117 - PP_3565 0.44 -0.6 4,044,117 - PP_3565 0.44 -0.7 4,044,235 + PP_3565 0.63 -3.8 4,044,235 + PP_3565 0.63 -0.5 4,044,235 + PP_3565 0.63 -3.2 4,044,235 + PP_3565 0.63 -0.7 4,044,235 + PP_3565 0.63 +0.3 4,044,235 + PP_3565 0.63 +0.0 4,044,235 + PP_3565 0.63 -0.0 4,044,235 + PP_3565 0.63 -1.0 4,044,236 - PP_3565 0.63 -2.0 4,044,236 - PP_3565 0.63 -0.3 4,044,659 + PP_3566 0.13 -1.9 4,044,659 + PP_3566 0.13 +0.4 4,044,659 + PP_3566 0.13 -1.2 4,044,660 - PP_3566 0.13 +0.1 4,044,701 + PP_3566 0.16 +0.0 4,044,701 + PP_3566 0.16 -2.5 4,044,702 - PP_3566 0.16 -1.9 4,044,702 - PP_3566 0.16 -0.1 4,044,899 - PP_3566 0.33 +0.7 4,044,899 - PP_3566 0.33 +0.5 4,044,992 + PP_3566 0.40 -0.4 4,045,025 + PP_3566 0.43 -0.3 4,045,094 + PP_3566 0.49 -0.4 4,045,094 + PP_3566 0.49 +0.8 4,045,094 + PP_3566 0.49 -0.4 4,045,094 + PP_3566 0.49 +0.8 4,045,095 - PP_3566 0.49 +0.2 4,045,095 - PP_3566 0.49 -1.3 4,045,095 - PP_3566 0.49 -0.0 4,045,095 - PP_3566 0.49 -0.2 4,045,269 + PP_3566 0.63 +0.7 4,045,418 - PP_3566 0.76 +0.2 4,045,418 - PP_3566 0.76 -1.1
Or see this region's nucleotide sequence