Strain Fitness in Pseudomonas putida KT2440 around PP_2855

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,257,024	-		PP_2853	0.90	-1.2
3,257,150	-				-0.2
3,257,175	+				+0.5
3,257,176	-				+0.9
3,257,176	-				+0.6
3,257,196	+				-1.8
3,257,488	+		PP_2854	0.38	-0.6
3,257,541	+		PP_2854	0.45	-0.5
3,257,556	-		PP_2854	0.47	+0.2
3,257,705	+		PP_2854	0.67	+0.3
3,257,705	+		PP_2854	0.67	-0.1
3,257,706	-				+0.5
3,257,706	-		PP_2854	0.67	-0.0
3,257,788	-		PP_2854	0.78	+0.8
3,257,788	-		PP_2854	0.78	+0.8
3,257,834	+		PP_2854	0.84	+1.3
3,257,953	-				-0.7
3,257,987	+				-0.1
3,258,188	+		PP_2855	0.28	-3.6
3,258,189	-		PP_2855	0.28	-1.6
3,258,189	-		PP_2855	0.28	-0.2
3,258,221	+		PP_2855	0.33	-2.3
3,258,221	+		PP_2855	0.33	+0.7
3,258,222	-		PP_2855	0.33	-0.8
3,258,222	-		PP_2855	0.33	-0.0
3,258,222	-		PP_2855	0.33	-0.8
3,258,266	+		PP_2855	0.39	-1.4
3,258,289	+		PP_2855	0.43	+0.4
3,258,473	+		PP_2855	0.70	-0.1
3,258,474	-		PP_2855	0.70	-1.6
3,258,692	-				-1.4
3,258,801	-				-0.2
3,258,862	+				-1.1
3,258,910	+		PP_2856	0.12	-0.4
3,258,911	-		PP_2856	0.12	+0.1
3,258,911	-		PP_2856	0.12	-1.4
3,258,911	-		PP_2856	0.12	+0.3
3,258,911	-		PP_2856	0.12	+0.1
3,258,911	-		PP_2856	0.12	+0.5
3,258,925	-		PP_2856	0.13	-0.8
3,259,021	-		PP_2856	0.19	-1.3
3,259,045	-		PP_2856	0.21	-2.0
3,259,092	+		PP_2856	0.24	-1.1
3,259,114	-		PP_2856	0.26	+2.6
3,259,129	-				+1.0
3,259,231	+		PP_2856	0.34	+1.8
3,259,231	+		PP_2856	0.34	+0.4
3,259,232	-		PP_2856	0.34	-1.2
3,259,238	-		PP_2856	0.34	+1.2
3,259,532	-		PP_2856	0.55	-1.6
3,259,548	+		PP_2856	0.56	-4.2
3,259,549	-		PP_2856	0.56	-3.7
3,259,571	+		PP_2856	0.57	+0.2