Strain Fitness in Pseudomonas putida KT2440 around PP_2585

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,950,409	+		PP_2584	0.41	-2.3
2,950,409	+		PP_2584	0.41	-0.2
2,950,409	+		PP_2584	0.41	+1.0
2,950,410	-		PP_2584	0.41	-2.4
2,950,410	-		PP_2584	0.41	-0.0
2,950,479	+		PP_2584	0.46	+0.4
2,950,480	-				-1.9
2,950,819	+		PP_2584	0.71	-1.2
2,950,819	+		PP_2584	0.71	+0.3
2,950,819	+		PP_2584	0.71	-0.6
2,950,819	+		PP_2584	0.71	+0.4
2,950,819	+		PP_2584	0.71	+2.1
2,950,819	+		PP_2584	0.71	+0.3
2,950,819	+		PP_2584	0.71	+1.8
2,950,819	+		PP_2584	0.71	+0.1
2,950,819	+		PP_2584	0.71	-0.9
2,950,820	-		PP_2584	0.71	-2.6
2,950,820	-		PP_2584	0.71	+1.1
2,950,820	-		PP_2584	0.71	-0.3
2,950,820	-		PP_2584	0.71	+0.2
2,950,820	-		PP_2584	0.71	+0.1
2,950,821	+		PP_2584	0.71	+0.1
2,950,821	+		PP_2584	0.71	-0.9
2,950,821	+		PP_2584	0.71	+0.1
2,950,822	-		PP_2584	0.71	+0.3
2,950,822	-		PP_2584	0.71	+0.1
2,950,822	-		PP_2584	0.71	-0.2
2,950,822	-		PP_2584	0.71	+0.2
2,950,822	-		PP_2584	0.71	-1.4
2,950,822	-		PP_2584	0.71	-0.6
2,950,822	-		PP_2584	0.71	+0.6
2,950,822	-		PP_2584	0.71	+0.1
2,950,822	-		PP_2584	0.71	-0.7
2,950,822	-		PP_2584	0.71	-2.2
2,950,995	+		PP_2584	0.83	+0.5
2,950,995	+		PP_2584	0.83	-0.4
2,950,995	+		PP_2584	0.83	+0.7
2,950,996	-		PP_2584	0.84	-0.2
2,951,212	+				-0.4
2,951,212	+				+0.4
2,951,213	-				-0.2
2,951,213	-				-0.7
2,951,240	-				-0.3
2,951,280	+				+0.7
2,951,281	-				+0.1
2,951,302	+				-0.8
2,951,477	-				-2.7
2,952,161	+		PP_2585	0.49	-1.5
2,952,307	+		PP_2585	0.59	-1.1
2,952,308	-		PP_2585	0.59	-0.4
2,952,308	-		PP_2585	0.59	-1.4
2,952,308	-		PP_2585	0.59	-0.4
2,952,592	+		PP_2585	0.77	-0.3
2,952,592	+		PP_2585	0.77	-2.4
2,952,859	+				+1.5
2,952,860	-				+0.7
2,953,003	+				-0.4
2,953,004	-				-1.6
2,953,036	+				-0.2
2,953,037	-				-0.1
2,953,037	-				-0.9
2,953,329	+		PP_2586	0.15	-1.8
2,953,330	-		PP_2586	0.16	-1.3
2,953,536	-		PP_2586	0.30	-2.6
2,953,590	+		PP_2586	0.34	+1.7
2,953,590	+		PP_2586	0.34	+0.0
2,953,591	-		PP_2586	0.34	-1.5
2,953,591	-		PP_2586	0.34	+1.2
2,953,591	-		PP_2586	0.34	-0.4
2,953,708	-		PP_2586	0.43	+1.5
2,953,708	-		PP_2586	0.43	-1.6
2,953,708	-		PP_2586	0.43	-0.9
2,953,708	-		PP_2586	0.43	+0.5
2,953,773	+		PP_2586	0.48	+0.5