Strain Fitness in Pseudomonas putida KT2440 around PP_2283

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,604,016	+		PP_2282	0.15	-0.6
2,604,016	+		PP_2282	0.15	+0.3
2,604,017	-		PP_2282	0.15	-3.0
2,604,017	-				+0.9
2,604,209	+		PP_2282	0.35	-0.1
2,604,239	+		PP_2282	0.38	-0.2
2,604,239	+		PP_2282	0.38	-2.2
2,604,246	-		PP_2282	0.39	-0.2
2,604,328	-		PP_2282	0.47	-1.8
2,604,373	-		PP_2282	0.52	-0.1
2,604,434	+		PP_2282	0.58	+0.5
2,604,461	+		PP_2282	0.61	+1.2
2,604,461	+		PP_2282	0.61	-0.2
2,604,461	+		PP_2282	0.61	+0.1
2,604,461	+		PP_2282	0.61	+0.8
2,604,461	+		PP_2282	0.61	+0.1
2,604,462	-		PP_2282	0.61	-0.3
2,604,462	-		PP_2282	0.61	+0.2
2,604,462	-		PP_2282	0.61	-0.2
2,604,462	-		PP_2282	0.61	-0.0
2,604,462	-		PP_2282	0.61	+0.0
2,604,518	+		PP_2282	0.67	-2.5
2,604,518	+		PP_2282	0.67	-0.3
2,604,518	+		PP_2282	0.67	-3.7
2,604,518	+		PP_2282	0.67	-0.7
2,604,518	+		PP_2282	0.67	+0.0
2,604,519	-		PP_2282	0.67	+1.3
2,604,519	-		PP_2282	0.67	-0.9
2,604,519	-		PP_2282	0.67	-1.6
2,604,519	-		PP_2282	0.67	-0.8
2,604,519	-		PP_2282	0.67	-1.5
2,604,647	+		PP_2282	0.80	-2.9
2,604,647	+		PP_2282	0.80	-1.6
2,604,648	-		PP_2282	0.80	+1.4
2,604,648	-				-2.3
2,604,648	-		PP_2282	0.80	-1.1
2,604,648	-		PP_2282	0.80	+0.0
2,604,648	-		PP_2282	0.80	-0.1
2,604,654	+		PP_2282	0.81	-1.4
2,604,654	+		PP_2282	0.81	+1.4
2,604,654	+		PP_2282	0.81	-0.0
2,604,655	-		PP_2282	0.81	-0.3
2,604,655	-		PP_2282	0.81	+0.3
2,604,820	-				-2.0
2,604,848	+				+1.3
2,604,849	-				-0.1
2,604,849	-				+0.4
2,604,895	-				+2.6
2,604,928	+				-2.0
2,604,928	+				-0.3
2,604,928	+				+1.0
2,604,928	+				-0.2
2,604,928	+				+0.5
2,604,928	+				-1.1
2,604,938	-				+1.3
2,604,938	-				-1.3
2,604,954	-				+0.2
2,605,089	+		PP_2283	0.32	-0.7
2,605,089	+		PP_2283	0.32	-1.1
2,605,090	-		PP_2283	0.32	-0.9
2,605,119	+		PP_2283	0.37	+0.3
2,605,119	+		PP_2283	0.37	-0.2
2,605,157	+		PP_2283	0.44	-0.6
2,605,227	+		PP_2283	0.56	-1.2
2,605,228	-		PP_2283	0.56	-1.4
2,605,228	-		PP_2283	0.56	+0.1
2,605,305	+		PP_2283	0.69	-0.4
2,605,305	+		PP_2283	0.69	-0.7
2,605,305	+		PP_2283	0.69	-1.7
2,605,306	-		PP_2283	0.69	-0.5
2,605,306	-		PP_2283	0.69	-0.8
2,605,306	-		PP_2283	0.69	+1.1
2,605,306	-		PP_2283	0.69	-0.2
2,605,437	+				-0.7
2,605,438	-				-1.2
2,605,458	+				+0.1
2,605,459	-				+0.7
2,605,459	-				-1.7
2,605,485	+				+0.3
2,605,486	-				-0.3
2,605,490	+				-2.4
2,605,490	+				-0.4
2,605,490	+				-0.2
2,605,490	+				-1.7
2,605,490	+				-0.0
2,605,490	+				-0.3
2,605,490	+				-0.8
2,605,490	+				-0.0
2,605,491	-				+0.0
2,605,491	-				+0.1
2,605,491	-				+1.2
2,605,491	-				-1.2
2,605,491	-				-0.4
2,605,491	-				+1.2
2,605,491	-				-1.5
2,605,491	-				+0.2
2,605,498	+				+0.8
2,605,499	-				-3.7
2,605,499	-				+0.4
2,605,747	+		PP_2284	0.11	+0.2
2,605,747	+		PP_2284	0.11	-3.0
2,605,748	-		PP_2284	0.11	+0.5
2,605,748	-		PP_2284	0.11	+0.6
2,605,854	+		PP_2284	0.15	-0.3
2,605,854	+		PP_2284	0.15	+0.1
2,605,855	-		PP_2284	0.16	+0.4
2,605,855	-		PP_2284	0.16	-1.0
2,605,855	-		PP_2284	0.16	-0.6
2,605,949	+		PP_2284	0.20	+0.2
2,605,950	-		PP_2284	0.20	-0.2
2,605,953	+		PP_2284	0.20	+1.5
2,605,954	-		PP_2284	0.20	+0.8
2,605,966	-		PP_2284	0.20	-1.5
2,605,997	+		PP_2284	0.22	+0.4
2,605,998	-		PP_2284	0.22	+0.5
2,605,998	-		PP_2284	0.22	-0.2
2,606,002	-		PP_2284	0.22	+0.4
2,606,002	-		PP_2284	0.22	-2.9
2,606,055	+		PP_2284	0.24	+1.2
2,606,055	+		PP_2284	0.24	+0.2
2,606,127	+		PP_2284	0.27	-0.6
2,606,127	+		PP_2284	0.27	-0.0
2,606,128	-		PP_2284	0.27	-0.0
2,606,163	+		PP_2284	0.29	-0.9
2,606,164	-		PP_2284	0.29	-1.2
2,606,206	+		PP_2284	0.30	-0.5
2,606,301	+		PP_2284	0.35	+0.0
2,606,301	+		PP_2284	0.35	+1.2
2,606,301	+		PP_2284	0.35	-0.9
2,606,302	-		PP_2284	0.35	-2.1
2,606,302	-		PP_2284	0.35	-1.3
2,606,302	-		PP_2284	0.35	-2.4
2,606,304	+		PP_2284	0.35	-4.5
2,606,304	+		PP_2284	0.35	-0.5
2,606,304	+		PP_2284	0.35	+1.0
2,606,305	-		PP_2284	0.35	+0.7
2,606,311	-		PP_2284	0.35	+1.4
2,606,311	-		PP_2284	0.35	+0.9
2,606,311	-		PP_2284	0.35	-1.8
2,606,311	-		PP_2284	0.35	-2.4
2,606,311	-		PP_2284	0.35	-0.5
2,606,313	+		PP_2284	0.35	+0.6
2,606,313	+		PP_2284	0.35	-1.3
2,606,314	-		PP_2284	0.35	-0.6
2,606,314	-		PP_2284	0.35	-0.7