Strain Fitness in Pseudomonas putida KT2440 around PP_1392

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,586,595	+		PP_1391	0.11	-0.9
1,586,595	+		PP_1391	0.11	+0.1
1,586,595	+		PP_1391	0.11	-0.0
1,586,595	+		PP_1391	0.11	-1.4
1,586,596	-		PP_1391	0.11	-3.2
1,586,596	-		PP_1391	0.11	-0.3
1,586,596	-		PP_1391	0.11	+1.2
1,586,596	-		PP_1391	0.11	+0.9
1,586,598	-		PP_1391	0.11	+0.6
1,586,598	-		PP_1391	0.11	+0.4
1,586,598	-		PP_1391	0.11	-1.4
1,586,684	+		PP_1391	0.21	-0.7
1,586,703	+		PP_1391	0.23	+0.3
1,586,703	+		PP_1391	0.23	-0.7
1,586,703	+		PP_1391	0.23	+1.0
1,586,825	+		PP_1391	0.36	+0.0
1,586,826	-		PP_1391	0.36	+0.4
1,586,826	-		PP_1391	0.36	+0.6
1,586,826	-		PP_1391	0.36	+0.0
1,586,826	-		PP_1391	0.36	-3.2
1,587,065	+		PP_1391	0.62	-2.3
1,587,065	+		PP_1391	0.62	-0.2
1,587,066	-		PP_1391	0.63	+0.4
1,587,066	-		PP_1391	0.63	+0.4
1,587,108	+		PP_1391	0.67	+0.6
1,587,109	-		PP_1391	0.67	-2.3
1,587,109	-		PP_1391	0.67	+1.4
1,587,121	-		PP_1391	0.69	+1.1
1,587,121	-		PP_1391	0.69	+0.8
1,587,300	-		PP_1391	0.88	-0.5
1,587,323	-				+0.3
1,587,332	+				+0.9
1,587,332	+				-0.2
1,587,431	+				-1.5
1,587,431	+				+0.6
1,587,467	+				-1.0
1,587,471	+				-1.2
1,587,471	+				-0.1
1,587,471	+				-0.0
1,587,471	+				+1.1
1,587,471	+				-0.5
1,587,471	+				-1.1
1,587,471	+				-0.7
1,587,471	+				-0.6
1,587,472	-				+0.6
1,587,472	-				-0.9
1,587,472	-				-0.7
1,587,472	-				-0.0
1,587,472	-				+0.3
1,587,472	-				+0.6
1,587,502	+				-1.1
1,587,584	-				-1.6
1,587,671	+		PP_1392	0.13	-1.0
1,587,672	-		PP_1392	0.13	-0.2
1,587,777	+		PP_1392	0.31	-3.3
1,587,888	+		PP_1392	0.49	-1.2
1,587,888	+		PP_1392	0.49	+0.1
1,587,946	+		PP_1392	0.58	-0.3
1,587,946	+		PP_1392	0.58	-0.2
1,587,946	+		PP_1392	0.58	-1.2
1,587,949	-		PP_1392	0.59	-0.7
1,587,949	-		PP_1392	0.59	-0.5
1,588,066	+		PP_1392	0.78	-1.0
1,588,067	-		PP_1392	0.78	-2.2
1,588,133	-				+0.9
1,588,188	+				-0.3
1,588,188	+				-2.5
1,588,189	-				-0.3
1,588,278	-				+1.0
1,588,302	+				-0.3
1,588,302	+				+0.1
1,588,302	+				-2.7
1,588,302	+				+1.3
1,588,302	+				+0.5
1,588,303	-				-0.8
1,588,303	-				-0.2
1,588,303	-				+0.6
1,588,305	+				-0.1
1,588,825	+		PP_1393	0.69	-2.6
1,588,825	+		PP_1393	0.69	-0.2
1,588,825	+		PP_1393	0.69	+0.6
1,588,825	+		PP_1393	0.69	-0.6
1,588,825	+		PP_1393	0.69	-0.0
1,588,825	+		PP_1393	0.69	+0.0
1,588,825	+		PP_1393	0.69	+0.4
1,588,825	+		PP_1393	0.69	-1.3
1,588,826	-		PP_1393	0.69	+0.4
1,588,826	-		PP_1393	0.69	-1.1
1,588,826	-		PP_1393	0.69	+0.7
1,588,826	-		PP_1393	0.69	+0.7
1,588,826	-		PP_1393	0.69	-0.6
1,588,953	+		PP_1393	0.83	+0.4
1,589,008	+		PP_1393	0.90	+0.3
1,589,009	-		PP_1393	0.90	-0.0
1,589,009	-		PP_1393	0.90	-0.6
1,589,128	+				-0.9
1,589,128	+				-4.1
1,589,131	+				-1.5
1,589,132	-				+0.4
1,589,132	-				-0.2
1,589,184	+				+0.4
1,589,184	+				-0.0
1,589,184	+				-1.6
1,589,185	-				-2.4
1,589,185	-				+0.7
1,589,185	-				+0.4
1,589,185	-				+0.6
1,589,185	-				-0.8
1,589,188	+				+0.9
1,589,188	+				+0.7
1,589,188	+				+0.4
1,589,189	-				+0.3