Strain Fitness in Pseudomonas putida KT2440 around PP_0670

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0669 and PP_0670 are separated by 133 nucleotidesPP_0670 and PP_0671 are separated by 121 nucleotides PP_0669: PP_0669 - Outer membrane ferric siderophore receptor, at 776,951 to 779,383 _0669 PP_0670: PP_0670 - Transporter, bile acid/Na+ symporter family, at 779,517 to 780,470 _0670 PP_0671: PP_0671 - serine hydroxymethyltransferase, at 780,592 to 781,845 _0671 Position (kb) 779 780 781Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 778.517 kb on + strand, within PP_0669at 778.517 kb on + strand, within PP_0669at 778.517 kb on + strand, within PP_0669at 778.518 kb on - strand, within PP_0669at 778.637 kb on - strand, within PP_0669at 778.637 kb on - strand, within PP_0669at 778.637 kb on - strand, within PP_0669at 778.637 kb on - strand, within PP_0669at 778.670 kb on + strand, within PP_0669at 778.670 kb on + strand, within PP_0669at 778.712 kb on + strand, within PP_0669at 778.722 kb on - strand, within PP_0669at 778.722 kb on - strand, within PP_0669at 778.796 kb on + strand, within PP_0669at 778.796 kb on + strand, within PP_0669at 778.797 kb on - strand, within PP_0669at 778.949 kb on - strand, within PP_0669at 778.949 kb on - strand, within PP_0669at 778.992 kb on + strand, within PP_0669at 778.992 kb on + strand, within PP_0669at 778.993 kb on - strand, within PP_0669at 778.993 kb on - strandat 779.004 kb on - strand, within PP_0669at 779.009 kb on + strand, within PP_0669at 779.009 kb on + strand, within PP_0669at 779.009 kb on + strand, within PP_0669at 779.010 kb on - strand, within PP_0669at 779.010 kb on - strand, within PP_0669at 779.010 kb on - strand, within PP_0669at 779.010 kb on - strand, within PP_0669at 779.010 kb on - strand, within PP_0669at 779.024 kb on + strand, within PP_0669at 779.024 kb on + strand, within PP_0669at 779.024 kb on + strand, within PP_0669at 779.148 kb on - strandat 779.148 kb on - strandat 779.148 kb on - strandat 779.189 kb on + strandat 779.210 kb on + strandat 779.210 kb on + strandat 779.210 kb on + strandat 779.210 kb on + strandat 779.237 kb on + strandat 779.238 kb on - strandat 779.238 kb on - strandat 779.267 kb on + strandat 779.267 kb on + strandat 779.267 kb on + strandat 779.267 kb on + strandat 779.268 kb on - strandat 779.298 kb on - strandat 779.301 kb on - strandat 779.325 kb on - strandat 779.382 kb on - strandat 779.390 kb on + strandat 779.390 kb on + strandat 779.493 kb on - strandat 779.499 kb on + strandat 779.499 kb on + strandat 779.499 kb on + strandat 779.499 kb on + strandat 779.499 kb on + strandat 779.499 kb on + strandat 779.499 kb on + strandat 779.500 kb on - strandat 779.500 kb on - strandat 779.500 kb on - strandat 779.500 kb on - strandat 779.500 kb on - strandat 779.500 kb on - strandat 779.500 kb on - strandat 779.544 kb on + strandat 779.544 kb on + strandat 779.545 kb on - strandat 779.545 kb on - strandat 779.545 kb on - strandat 779.548 kb on + strandat 779.548 kb on + strandat 779.548 kb on + strandat 779.548 kb on + strandat 779.548 kb on + strandat 779.548 kb on + strandat 779.549 kb on - strandat 779.549 kb on - strandat 779.549 kb on - strandat 779.549 kb on - strandat 779.571 kb on + strandat 779.767 kb on + strand, within PP_0670at 779.767 kb on + strand, within PP_0670at 779.767 kb on + strand, within PP_0670at 779.767 kb on + strand, within PP_0670at 779.768 kb on - strand, within PP_0670at 779.768 kb on - strand, within PP_0670at 779.769 kb on + strand, within PP_0670at 779.770 kb on - strand, within PP_0670at 779.808 kb on + strand, within PP_0670at 779.809 kb on - strand, within PP_0670at 779.809 kb on - strand, within PP_0670at 779.809 kb on - strand, within PP_0670at 780.037 kb on + strand, within PP_0670at 780.038 kb on - strand, within PP_0670at 780.136 kb on + strand, within PP_0670at 780.136 kb on + strand, within PP_0670at 780.136 kb on + strand, within PP_0670at 780.153 kb on - strand, within PP_0670at 780.309 kb on + strand, within PP_0670at 780.309 kb on + strand, within PP_0670at 780.310 kb on - strand, within PP_0670at 780.310 kb on - strand, within PP_0670at 780.310 kb on - strand, within PP_0670at 780.310 kb on - strand, within PP_0670at 780.329 kb on - strand, within PP_0670at 780.329 kb on - strand, within PP_0670at 780.408 kb on - strandat 780.418 kb on - strandat 780.430 kb on + strandat 780.431 kb on - strandat 780.495 kb on + strandat 780.496 kb on - strandat 780.496 kb on - strandat 780.496 kb on - strandat 780.516 kb on - strandat 780.536 kb on - strandat 780.539 kb on - strandat 780.539 kb on - strandat 780.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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778,517 + PP_0669 0.64 -0.0
778,517 + PP_0669 0.64 +0.1
778,517 + PP_0669 0.64 -0.3
778,518 - PP_0669 0.64 +0.3
778,637 - PP_0669 0.69 -1.6
778,637 - PP_0669 0.69 +1.8
778,637 - PP_0669 0.69 +0.2
778,637 - PP_0669 0.69 -0.0
778,670 + PP_0669 0.71 -0.8
778,670 + PP_0669 0.71 -3.2
778,712 + PP_0669 0.72 -0.1
778,722 - PP_0669 0.73 +0.9
778,722 - PP_0669 0.73 -0.8
778,796 + PP_0669 0.76 +0.0
778,796 + PP_0669 0.76 +0.2
778,797 - PP_0669 0.76 -0.7
778,949 - PP_0669 0.82 +1.2
778,949 - PP_0669 0.82 +0.6
778,992 + PP_0669 0.84 +0.9
778,992 + PP_0669 0.84 +0.1
778,993 - PP_0669 0.84 -0.4
778,993 - +0.5
779,004 - PP_0669 0.84 -0.1
779,009 + PP_0669 0.85 +0.1
779,009 + PP_0669 0.85 +0.5
779,009 + PP_0669 0.85 +1.2
779,010 - PP_0669 0.85 +1.7
779,010 - PP_0669 0.85 -1.1
779,010 - PP_0669 0.85 -1.0
779,010 - PP_0669 0.85 -1.4
779,010 - PP_0669 0.85 -0.0
779,024 + PP_0669 0.85 -1.1
779,024 + PP_0669 0.85 +0.6
779,024 + PP_0669 0.85 +0.7
779,148 - -1.3
779,148 - -2.9
779,148 - -0.7
779,189 + -0.9
779,210 + -0.8
779,210 + -1.1
779,210 + +0.1
779,210 + -0.0
779,237 + -0.2
779,238 - +0.5
779,238 - +0.1
779,267 + +0.3
779,267 + +0.0
779,267 + -0.2
779,267 + +0.5
779,268 - -0.6
779,298 - -2.9
779,301 - +0.5
779,325 - +1.0
779,382 - +1.1
779,390 + -2.8
779,390 + -0.3
779,493 - +0.6
779,499 + +0.5
779,499 + +1.0
779,499 + -0.2
779,499 + +0.5
779,499 + +0.1
779,499 + -1.0
779,499 + -0.5
779,500 - +0.4
779,500 - -1.4
779,500 - +0.3
779,500 - -0.5
779,500 - -0.7
779,500 - -1.0
779,500 - +0.3
779,544 + +0.8
779,544 + +0.6
779,545 - -1.0
779,545 - -0.6
779,545 - -0.1
779,548 + -0.1
779,548 + -0.7
779,548 + -0.3
779,548 + -2.1
779,548 + +1.4
779,548 + +0.7
779,549 - -0.6
779,549 - +0.6
779,549 - +1.0
779,549 - -0.0
779,571 + -2.9
779,767 + PP_0670 0.26 +0.9
779,767 + PP_0670 0.26 +0.8
779,767 + PP_0670 0.26 +0.8
779,767 + PP_0670 0.26 -0.2
779,768 - PP_0670 0.26 +1.3
779,768 - PP_0670 0.26 +1.1
779,769 + PP_0670 0.26 +0.6
779,770 - PP_0670 0.27 +0.5
779,808 + PP_0670 0.31 +1.2
779,809 - PP_0670 0.31 -2.1
779,809 - PP_0670 0.31 +1.1
779,809 - PP_0670 0.31 +0.6
780,037 + PP_0670 0.55 -0.4
780,038 - PP_0670 0.55 -1.3
780,136 + PP_0670 0.65 -0.1
780,136 + PP_0670 0.65 +0.6
780,136 + PP_0670 0.65 +0.5
780,153 - PP_0670 0.67 -0.5
780,309 + PP_0670 0.83 -0.9
780,309 + PP_0670 0.83 +0.5
780,310 - PP_0670 0.83 -1.2
780,310 - PP_0670 0.83 +1.6
780,310 - PP_0670 0.83 -0.3
780,310 - PP_0670 0.83 +0.2
780,329 - PP_0670 0.85 +1.3
780,329 - PP_0670 0.85 +0.3
780,408 - +0.3
780,418 - +0.4
780,430 + -4.2
780,431 - +0.3
780,495 + +0.5
780,496 - -1.9
780,496 - -0.1
780,496 - +0.7
780,516 - +0.2
780,536 - +1.0
780,539 - -0.6
780,539 - +0.2
780,579 - -0.4

Or see this region's nucleotide sequence