Strain Fitness in Pseudomonas putida KT2440 around PP_5547

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,382,445	+				+0.2
3,382,446	-				-0.2
3,382,446	-				+0.2
3,382,541	-		PP_5545	0.24	+0.0
3,382,555	+		PP_5545	0.33	+0.7
3,382,555	+		PP_5545	0.33	+0.0
3,382,555	+		PP_5545	0.33	-0.2
3,382,555	+		PP_5545	0.33	-1.3
3,382,622	+		PP_5545	0.73	+0.7
3,382,623	-		PP_5545	0.73	-3.5
3,382,642	+		PP_5545	0.85	+1.3
3,382,642	+		PP_5545	0.85	-0.1
3,382,643	-		PP_5545	0.85	-0.8
3,382,647	-		PP_5545	0.88	-2.3
3,382,662	-				+0.4
3,382,665	+				+0.7
3,382,666	-				+0.4
3,382,666	-				-1.3
3,382,704	-				-0.2
3,382,707	+				+0.2
3,382,707	+				+1.1
3,382,708	-				+0.0
3,382,708	-				-2.2
3,382,740	-				-0.5
3,382,743	+				+0.1
3,382,751	+				-0.2
3,382,756	+				+0.5
3,382,756	+				-1.6
3,382,756	+				-0.7
3,382,757	-				+0.9
3,382,776	-				+0.4
3,382,784	+				+0.0
3,382,802	-				-0.2
3,382,803	+				+0.9
3,382,803	+				-0.3
3,382,863	+				+0.3
3,383,054	-		PP_5546	0.55	-0.1
3,383,113	-		PP_5546	0.74	-0.7
3,383,141	+		PP_5546	0.83	+0.3
3,383,150	+				-0.3
3,383,178	-				-0.6
3,383,191	+				-0.2
3,383,191	+				+0.1
3,383,191	+				-0.1
3,383,191	+				+1.2
3,383,192	-				-0.3
3,383,192	-				-0.7
3,383,210	+				+0.5
3,383,211	-				-0.0
3,383,247	-		PP_5547	0.17	+1.4
3,383,261	+		PP_5547	0.22	+0.7
3,383,265	-		PP_5547	0.23	+0.5
3,383,265	-		PP_5547	0.23	+0.5
3,383,324	+		PP_5547	0.43	+1.3
3,383,325	-		PP_5547	0.43	+0.4
3,383,417	+		PP_5547	0.74	-0.8
3,383,424	+		PP_5547	0.76	-2.1
3,383,424	+		PP_5547	0.76	+1.3
3,383,424	+		PP_5547	0.76	+0.4
3,383,425	-		PP_5547	0.76	-0.2
3,383,495	-				+0.9
3,383,495	-				-2.1
3,383,538	-				+0.7
3,383,588	+		PP_2985	0.12	-0.9
3,383,613	+		PP_2985	0.17	-2.9
3,383,618	-		PP_2985	0.18	-1.4
3,383,671	+		PP_2985	0.28	-0.0
3,383,672	-		PP_2985	0.28	-0.9
3,383,750	+		PP_2985	0.42	+0.0
3,383,772	-		PP_2985	0.46	-0.4
3,383,798	-		PP_2985	0.51	-0.1
3,383,832	+		PP_2985	0.57	+1.3
3,383,832	+		PP_2985	0.57	+0.6
3,383,832	+		PP_2985	0.57	+0.6
3,383,833	-		PP_2985	0.57	+0.1
3,383,833	-		PP_2985	0.57	-0.2
3,383,836	+		PP_2985	0.58	-1.7
3,383,836	+		PP_2985	0.58	-0.4
3,383,836	+		PP_2985	0.58	-0.1
3,383,874	-		PP_2985	0.65	-0.1
3,383,874	-		PP_2985	0.65	-0.1
3,383,961	-		PP_2985	0.81	-0.9
3,383,961	-		PP_2985	0.81	+0.1
3,383,961	-		PP_2985	0.81	-0.8
3,383,991	+		PP_2985	0.86	+0.7
3,383,992	-		PP_2985	0.86	-0.1
3,383,992	-		PP_2985	0.86	+0.6
3,384,083	-				-1.2
3,384,086	+				+1.2
3,384,086	+				-0.2
3,384,086	+				+1.0
3,384,086	+				-0.7
3,384,087	-				+0.9
3,384,136	+				+0.0
3,384,136	+				-0.6
3,384,209	+		PP_5548	0.24	+0.0
3,384,210	-		PP_5548	0.25	-1.4
3,384,228	-		PP_5548	0.42	+1.0
3,384,228	-				-0.4
3,384,228	-		PP_5548	0.42	-1.4