Strain Fitness in Pseudomonas putida KT2440 around PP_5485

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,176,546	+				+0.8
2,176,546	+				+0.2
2,176,546	+				+0.3
2,176,546	+				+0.6
2,176,547	-				-0.5
2,176,714	+		PP_1930	0.37	+0.7
2,176,718	-		PP_1930	0.38	-2.8
2,176,718	-		PP_1930	0.38	-0.7
2,176,817	+		PP_1930	0.63	+0.8
2,176,817	+		PP_1930	0.63	+0.9
2,176,895	+		PP_1930	0.83	-0.7
2,176,999	-				+0.4
2,177,008	-				-1.4
2,177,011	+				-0.3
2,177,040	-				+1.2
2,177,070	+				-0.2
2,177,070	+				-0.4
2,177,070	+				-1.6
2,177,070	+				+1.5
2,177,071	-				+0.2
2,177,071	-				-0.2
2,177,071	-				-0.8
2,177,071	-				-0.4
2,177,071	-				+0.2
2,177,071	-				-0.6
2,177,072	+				-1.3
2,177,072	+				+1.8
2,177,072	+				-1.0
2,177,073	-				-0.9
2,177,073	-				-0.6
2,177,073	-				+0.4
2,177,086	-				+0.3
2,177,119	+				+1.5
2,177,119	+				-0.2
2,177,120	-				+0.0
2,177,120	-				+0.6
2,177,160	+		PP_5485	0.11	+0.1
2,177,160	+		PP_5485	0.11	-0.5
2,177,161	-		PP_5485	0.11	-1.9
2,177,225	+		PP_5485	0.24	-3.3
2,177,225	+		PP_5485	0.24	+0.3
2,177,225	+		PP_5485	0.24	+1.4
2,177,226	-		PP_5485	0.24	+0.4
2,177,226	-		PP_5485	0.24	+0.6
2,177,226	-		PP_5485	0.24	+0.8
2,177,226	-		PP_5485	0.24	+1.0
2,177,314	-		PP_5485	0.42	-3.2
2,177,445	-		PP_5485	0.69	+2.0
2,177,529	-		PP_5485	0.86	+0.8
2,177,574	+				+0.3
2,177,574	+				-2.9
2,177,574	+				+0.2
2,177,574	+				-1.0
2,177,575	-				+0.4
2,177,674	+				+1.3
2,177,675	-				+0.2
2,177,803	+				+0.2
2,177,803	+				-2.7
2,177,803	+				+0.2
2,177,803	+				-0.5
2,177,804	-				+1.2
2,177,804	-				+0.7
2,177,804	-				+0.8
2,177,804	-				-2.0
2,177,804	-				-0.6
2,177,804	-				-1.9
2,177,832	-				+0.3
2,177,942	+				+2.6
2,177,969	+		PP_1931	0.14	-0.7
2,177,970	-		PP_1931	0.14	-0.9
2,177,970	-		PP_1931	0.14	-0.0
2,177,970	-		PP_1931	0.14	-0.6
2,177,970	-		PP_1931	0.14	-0.8
2,177,975	+		PP_1931	0.15	+0.6
2,177,975	+		PP_1931	0.15	-1.4
2,177,975	+		PP_1931	0.15	+0.4
2,177,975	+		PP_1931	0.15	+0.4
2,177,976	-		PP_1931	0.15	+0.6
2,177,976	-		PP_1931	0.15	+0.3
2,177,981	+		PP_1931	0.15	-1.4
2,177,985	+		PP_1931	0.15	-1.5
2,178,109	+		PP_1931	0.24	-0.2
2,178,121	+		PP_1931	0.25	+1.2
2,178,122	-				+1.1
2,178,229	+		PP_1931	0.32	-0.9
2,178,229	+		PP_1931	0.32	-1.6
2,178,230	-		PP_1931	0.32	+0.4
2,178,230	-		PP_1931	0.32	+0.4
2,178,290	+		PP_1931	0.37	-0.8
2,178,290	+		PP_1931	0.37	-0.1
2,178,291	-		PP_1931	0.37	-0.2
2,178,406	+		PP_1931	0.45	-0.1
2,178,420	+		PP_1931	0.46	-0.3
2,178,420	+		PP_1931	0.46	+0.4
2,178,421	-		PP_1931	0.46	+1.2
2,178,421	-		PP_1931	0.46	+0.9
2,178,509	+		PP_1931	0.52	+0.1
2,178,509	+		PP_1931	0.52	-0.5
2,178,511	+		PP_1931	0.52	+0.4
2,178,511	+		PP_1931	0.52	-0.1
2,178,512	-		PP_1931	0.52	-0.8
2,178,512	-		PP_1931	0.52	+1.3
2,178,516	+		PP_1931	0.52	-0.5
2,178,516	+		PP_1931	0.52	-0.3
2,178,517	-		PP_1931	0.52	+0.5
2,178,517	-		PP_1931	0.52	-0.1
2,178,517	-		PP_1931	0.52	+0.6
2,178,517	-		PP_1931	0.52	-0.5
2,178,517	-		PP_1931	0.52	-3.3