Strain Fitness in Pseudomonas putida KT2440 around PP_5295

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
6,041,085	+		PP_5293	0.75	+0.1
6,041,086	-		PP_5293	0.75	-0.1
6,041,086	-		PP_5293	0.75	+0.6
6,041,312	-		PP_5294	0.15	+0.4
6,041,389	-		PP_5294	0.26	+0.4
6,041,389	-		PP_5294	0.26	-0.0
6,041,418	+		PP_5294	0.30	+1.7
6,041,418	+		PP_5294	0.30	+0.4
6,041,419	-		PP_5294	0.30	-2.3
6,041,419	-		PP_5294	0.30	+0.1
6,041,419	-		PP_5294	0.30	+0.8
6,041,419	-		PP_5294	0.30	-2.2
6,041,419	-		PP_5294	0.30	+0.4
6,041,583	+		PP_5294	0.53	-0.9
6,041,583	+		PP_5294	0.53	-1.6
6,041,583	+		PP_5294	0.53	-1.5
6,041,583	+		PP_5294	0.53	-0.3
6,041,583	+		PP_5294	0.53	-0.9
6,041,584	-		PP_5294	0.53	+1.3
6,041,584	-		PP_5294	0.53	-1.1
6,041,701	+		PP_5294	0.69	-0.0
6,041,702	-		PP_5294	0.69	-0.6
6,041,733	+		PP_5294	0.74	-0.8
6,041,733	+		PP_5294	0.74	+1.5
6,041,734	-		PP_5294	0.74	-0.1
6,041,780	+		PP_5294	0.80	+1.7
6,041,862	+				+0.3
6,041,862	+				-0.3
6,041,862	+				+0.5
6,041,863	-				+0.5
6,041,863	-				+0.0
6,041,931	-				-0.3
6,041,963	+				+2.9
6,041,963	+				-0.1
6,041,963	+				-2.0
6,041,964	-				-0.1
6,041,964	-				-0.2
6,041,964	-				+0.9
6,041,965	+				+0.4
6,041,965	+				+0.2
6,041,965	+				+0.9
6,041,966	-				+0.3
6,041,966	-				-0.0
6,041,966	-				+0.8
6,041,966	-				-0.4
6,041,966	-				-1.2
6,041,966	-				+0.1
6,041,966	-				+0.1
6,041,994	+				+0.8
6,041,994	+				+0.0
6,041,995	-				+0.8
6,041,995	-				+0.2
6,041,995	-				-0.7
6,041,995	-				+1.2
6,042,056	+				+0.9
6,042,057	-				-0.6
6,042,143	+				-0.1
6,042,767	+		PP_5295	0.74	+0.8
6,042,767	+		PP_5295	0.74	+0.6
6,042,971	+				-0.0
6,042,971	+				-0.9
6,042,971	+				-0.8
6,042,998	+				-0.7
6,042,998	+				+0.6
6,042,998	+				-0.6
6,042,998	+				-2.4
6,043,683	+				+0.3
6,043,684	-				+0.3
6,043,684	-				+0.6
6,043,684	-				+0.4
6,043,703	-				-0.1
6,043,703	-				+0.9
6,043,703	-				-1.7
6,043,703	-				+0.2
6,043,735	-				-0.5
6,043,897	+		PP_5297	0.13	-0.4
6,043,897	+		PP_5297	0.13	-0.5
6,043,897	+		PP_5297	0.13	+0.2
6,043,897	+		PP_5297	0.13	-0.3
6,043,897	+		PP_5297	0.13	-0.1
6,043,897	+		PP_5297	0.13	+0.4
6,043,898	-		PP_5297	0.13	-1.4
6,043,898	-		PP_5297	0.13	-0.4
6,043,898	-		PP_5297	0.13	-1.4
6,043,898	-		PP_5297	0.13	-0.5
6,043,898	-		PP_5297	0.13	-1.8
6,043,898	-		PP_5297	0.13	+0.4
6,043,898	-		PP_5297	0.13	+2.2
6,043,972	-		PP_5297	0.18	+0.9
6,044,001	+		PP_5297	0.20	+0.3
6,044,002	-		PP_5297	0.20	+0.7
6,044,005	-		PP_5297	0.20	+0.1
6,044,005	-		PP_5297	0.20	+0.2