Strain Fitness in Pseudomonas putida KT2440 around PP_5156

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
5,881,756	-		PP_5155	0.26	-0.3
5,881,756	-		PP_5155	0.26	-0.5
5,881,929	-		PP_5155	0.40	+0.6
5,881,971	+		PP_5155	0.43	+1.6
5,881,971	+		PP_5155	0.43	-2.8
5,881,972	-		PP_5155	0.43	-0.3
5,881,972	-		PP_5155	0.43	-3.1
5,882,382	+		PP_5155	0.77	-0.6
5,882,382	+		PP_5155	0.77	-1.1
5,882,396	+		PP_5155	0.78	-0.6
5,882,575	-				+0.6
5,882,582	-				-0.7
5,882,582	-				-0.5
5,882,602	-				-2.8
5,882,602	-				-0.7
5,882,667	+				+1.2
5,882,668	-				+0.2
5,882,668	-				-1.6
5,882,668	-				+0.0
5,882,668	-				+2.9
5,882,668	-				-0.5
5,882,668	-				-0.4
5,882,668	-				-0.0
5,882,756	-				+0.3
5,882,775	+		PP_5156	0.12	+0.4
5,882,775	+		PP_5156	0.12	+1.1
5,882,775	+		PP_5156	0.12	+1.2
5,882,776	-		PP_5156	0.12	+0.2
5,882,824	+				+1.7
5,883,010	+		PP_5156	0.61	+0.2
5,883,183	-				+1.0
5,883,215	+				+0.2
5,883,215	+				+1.7
5,883,215	+				-0.7
5,883,258	+				+0.7
5,883,259	-				-0.4
5,883,259	-				+0.8
5,883,268	-				+0.5
5,883,268	-				-0.5
5,883,268	-				-0.6
5,883,302	-				-0.3
5,883,342	+				-0.8
5,883,343	-				+0.8
5,883,414	+				+0.4
5,883,414	+				+0.8
5,883,414	+				+0.5
5,883,415	-				+0.1
5,883,415	-				-0.6
5,883,415	-				-0.2
5,883,415	-				-0.9
5,883,415	-				-0.3
5,883,415	-				-0.1
5,883,431	-				+1.3
5,883,431	-				-0.2
5,883,436	+				+0.2
5,883,437	-				+0.3
5,883,437	-				-1.7
5,883,448	+				-0.3
5,883,448	+				+0.7
5,883,449	-				+0.2
5,883,521	-		PP_5157	0.21	+0.4
5,883,540	+		PP_5157	0.25	-0.0
5,883,678	+		PP_5157	0.53	-0.7
5,883,678	+		PP_5157	0.53	+1.1
5,883,679	-		PP_5157	0.54	-1.7
5,883,736	+		PP_5157	0.65	-0.5
5,883,736	+		PP_5157	0.65	+0.3
5,883,737	-		PP_5157	0.65	-0.0
5,883,737	-		PP_5157	0.65	+1.6
5,883,737	-		PP_5157	0.65	-2.5
5,883,737	-		PP_5157	0.65	+0.1
5,883,737	-		PP_5157	0.65	-0.2
5,883,903	+				+0.1
5,883,904	-				+0.0
5,883,955	-				+0.1
5,883,965	-				+1.1
5,884,034	+				+0.4
5,884,034	+				-0.1
5,884,034	+				-0.1
5,884,034	+				+0.7
5,884,034	+				-0.2
5,884,035	-				+1.5
5,884,035	-				+0.1
5,884,035	-				-0.1
5,884,035	-				-0.1
5,884,035	-				-0.8
5,884,036	+				-0.1
5,884,036	+				-1.1
5,884,036	+				-0.8
5,884,037	-				-1.0
5,884,037	-				-1.3
5,884,037	-				-0.1
5,884,037	-				+0.9
5,884,040	-				+0.4
5,884,161	+		PP_5158	0.27	-0.2
5,884,161	+		PP_5158	0.27	+0.4
5,884,161	+		PP_5158	0.27	+0.5
5,884,161	+		PP_5158	0.27	-2.5
5,884,161	+		PP_5158	0.27	+0.8
5,884,161	+		PP_5158	0.27	+0.2
5,884,161	+		PP_5158	0.27	+0.4
5,884,162	-		PP_5158	0.27	-0.2
5,884,162	-		PP_5158	0.27	-0.2
5,884,162	-		PP_5158	0.27	+0.1
5,884,162	-		PP_5158	0.27	-0.7