Strain Fitness in Pseudomonas putida KT2440 around PP_5070

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
5,786,092	+		PP_5068	0.75	-0.2
5,786,092	+		PP_5068	0.75	+0.2
5,786,093	-		PP_5068	0.75	+0.3
5,786,200	+		PP_5068	0.82	-0.2
5,786,200	+		PP_5068	0.82	-1.3
5,786,275	+		PP_5068	0.87	+0.3
5,786,333	-				+1.7
5,786,333	-				-1.3
5,786,401	+				-1.1
5,786,401	+				+1.2
5,786,604	+				+0.8
5,786,605	-				+0.4
5,786,732	+		PP_5069	0.33	-0.6
5,786,733	-		PP_5069	0.33	+0.7
5,786,888	-		PP_5069	0.69	-0.2
5,786,910	+		PP_5069	0.74	+1.0
5,786,910	+		PP_5069	0.74	-0.1
5,786,910	+		PP_5069	0.74	-1.2
5,786,911	-		PP_5069	0.74	-0.0
5,786,911	-		PP_5069	0.74	-0.1
5,786,911	-		PP_5069	0.74	-0.1
5,786,911	-		PP_5069	0.74	+0.2
5,786,911	-		PP_5069	0.74	-0.1
5,786,911	-		PP_5069	0.74	-0.8
5,787,021	-				-1.2
5,787,146	+		PP_5070	0.16	+0.2
5,787,146	+		PP_5070	0.16	+1.2
5,787,146	+		PP_5070	0.16	+1.2
5,787,147	-		PP_5070	0.17	+0.2
5,787,415	-		PP_5070	0.51	+0.7
5,787,415	-		PP_5070	0.51	+0.1
5,787,422	+		PP_5070	0.52	+2.2
5,787,422	+		PP_5070	0.52	+0.2
5,787,551	+		PP_5070	0.69	+0.3
5,787,551	+		PP_5070	0.69	+0.2
5,787,552	-		PP_5070	0.69	+0.9
5,787,552	-		PP_5070	0.69	-0.2
5,787,552	-		PP_5070	0.69	+0.1
5,787,552	-		PP_5070	0.69	+0.8
5,787,555	+		PP_5070	0.69	+0.4
5,787,656	+		PP_5070	0.82	+0.3
5,787,807	+				-0.2
5,787,808	-				+0.2
5,787,825	+				-1.0
5,787,826	-				+1.1
5,787,826	-				-0.1
5,787,993	+		PP_5071	0.14	+0.3
5,787,993	+		PP_5071	0.14	-0.3
5,787,993	+		PP_5071	0.14	+0.6
5,787,994	-		PP_5071	0.14	-0.0
5,788,215	+		PP_5071	0.38	-0.0
5,788,215	+		PP_5071	0.38	-0.9
5,788,358	+		PP_5071	0.54	+0.6
5,788,358	+		PP_5071	0.54	+0.6
5,788,556	+		PP_5071	0.76	+0.5
5,788,557	-		PP_5071	0.76	+1.1
5,788,618	+		PP_5071	0.83	-2.2
5,788,618	+		PP_5071	0.83	+0.1
5,788,618	+		PP_5071	0.83	-0.2
5,788,746	+				+0.2
5,788,747	-				-0.4
5,788,747	-				+0.7
5,788,747	-				+0.4