Experiment: R2A with Fusaric 240 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4732 and PP_4733 are separated by 49 nucleotides PP_4733 and PP_4734 are separated by 132 nucleotides PP_4734 and PP_4735 are separated by 256 nucleotides
PP_4732: PP_4732 - conserved protein of unknown function, at 5,381,300 to 5,381,848
_4732
PP_4733: PP_4733 - SsrA-binding protein, at 5,381,898 to 5,382,380
_4733
PP_4734: PP_4734 - DNA-binding transcriptional dual regulator, LldR-L-lactate, at 5,382,513 to 5,383,280
_4734
PP_4735: PP_4735 - L-lactate permease, at 5,383,537 to 5,385,207
_4735
Position (kb) 5382
5383
5384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5381.814 kb on - strand at 5381.883 kb on + strand at 5381.883 kb on + strand at 5381.883 kb on + strand at 5381.897 kb on + strand at 5382.378 kb on + strand at 5382.378 kb on + strand at 5382.379 kb on - strand at 5382.382 kb on + strand at 5382.382 kb on + strand at 5382.382 kb on + strand at 5382.383 kb on - strand at 5382.383 kb on - strand at 5382.460 kb on - strand at 5382.496 kb on + strand at 5382.505 kb on + strand at 5382.506 kb on - strand at 5382.589 kb on + strand at 5382.590 kb on - strand, within PP_4734 at 5382.590 kb on - strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.652 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.706 kb on + strand, within PP_4734 at 5382.707 kb on - strand, within PP_4734 at 5382.868 kb on + strand, within PP_4734 at 5382.868 kb on + strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.869 kb on - strand, within PP_4734 at 5382.940 kb on + strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.941 kb on - strand, within PP_4734 at 5382.944 kb on - strand, within PP_4734 at 5383.264 kb on - strand at 5383.264 kb on - strand at 5383.264 kb on - strand at 5383.324 kb on - strand at 5383.324 kb on - strand at 5383.324 kb on - strand at 5383.400 kb on - strand at 5383.457 kb on + strand at 5383.522 kb on + strand at 5383.522 kb on + strand at 5383.523 kb on - strand at 5383.536 kb on + strand at 5383.537 kb on - strand at 5383.558 kb on + strand at 5383.558 kb on + strand at 5383.558 kb on + strand at 5383.559 kb on - strand at 5383.559 kb on - strand at 5383.559 kb on - strand at 5383.559 kb on - strand at 5383.559 kb on - strand at 5383.659 kb on - strand at 5383.747 kb on + strand, within PP_4735 at 5383.807 kb on + strand, within PP_4735 at 5383.808 kb on - strand, within PP_4735 at 5383.999 kb on + strand, within PP_4735 at 5384.000 kb on - strand, within PP_4735 at 5384.000 kb on - strand, within PP_4735 at 5384.000 kb on - strand, within PP_4735 at 5384.251 kb on + strand, within PP_4735 at 5384.252 kb on - strand, within PP_4735 at 5384.252 kb on - strand, within PP_4735
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL remove 5,381,814 - -0.9 5,381,883 + +0.1 5,381,883 + -0.5 5,381,883 + -0.4 5,381,897 + +0.9 5,382,378 + -0.2 5,382,378 + -0.3 5,382,379 - +0.3 5,382,382 + -0.6 5,382,382 + -0.1 5,382,382 + +0.9 5,382,383 - -1.9 5,382,383 - -0.0 5,382,460 - -0.4 5,382,496 + -1.2 5,382,505 + -0.8 5,382,506 - -0.9 5,382,589 + +0.7 5,382,590 - PP_4734 0.10 +0.3 5,382,590 - PP_4734 0.10 +1.3 5,382,652 + PP_4734 0.18 +0.3 5,382,652 + PP_4734 0.18 +0.9 5,382,652 + PP_4734 0.18 +0.5 5,382,706 + PP_4734 0.25 +0.5 5,382,706 + PP_4734 0.25 +1.3 5,382,706 + PP_4734 0.25 +0.6 5,382,706 + PP_4734 0.25 +0.3 5,382,706 + PP_4734 0.25 +0.5 5,382,706 + PP_4734 0.25 -0.5 5,382,707 - PP_4734 0.25 +2.3 5,382,868 + PP_4734 0.46 +1.4 5,382,868 + PP_4734 0.46 +0.1 5,382,869 - PP_4734 0.46 +0.9 5,382,869 - PP_4734 0.46 +0.1 5,382,869 - PP_4734 0.46 -0.1 5,382,940 + PP_4734 0.56 -0.3 5,382,941 - PP_4734 0.56 +0.5 5,382,941 - PP_4734 0.56 +0.3 5,382,941 - PP_4734 0.56 +0.3 5,382,941 - PP_4734 0.56 +0.5 5,382,941 - PP_4734 0.56 -0.5 5,382,944 - PP_4734 0.56 +0.6 5,383,264 - +0.1 5,383,264 - +0.2 5,383,264 - +0.2 5,383,324 - +1.0 5,383,324 - +0.9 5,383,324 - -0.2 5,383,400 - -0.9 5,383,457 + -0.4 5,383,522 + -0.8 5,383,522 + +0.4 5,383,523 - +0.1 5,383,536 + -0.5 5,383,537 - +1.0 5,383,558 + -0.0 5,383,558 + -0.0 5,383,558 + +0.9 5,383,559 - -0.2 5,383,559 - -0.1 5,383,559 - -0.4 5,383,559 - -1.2 5,383,559 - -0.8 5,383,659 - +0.6 5,383,747 + PP_4735 0.13 -0.6 5,383,807 + PP_4735 0.16 -0.4 5,383,808 - PP_4735 0.16 -0.1 5,383,999 + PP_4735 0.28 -1.8 5,384,000 - PP_4735 0.28 +1.1 5,384,000 - PP_4735 0.28 +0.6 5,384,000 - PP_4735 0.28 -3.5 5,384,251 + PP_4735 0.43 -1.8 5,384,252 - PP_4735 0.43 -1.0 5,384,252 - PP_4735 0.43 -0.3
Or see this region's nucleotide sequence