Strain Fitness in Pseudomonas putida KT2440 around PP_4381

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,972,761	+		PP_4380	0.50	+0.5
4,972,892	+		PP_4380	0.58	-0.9
4,972,892	+		PP_4380	0.58	+0.8
4,972,892	+		PP_4380	0.58	-0.0
4,972,930	+		PP_4380	0.61	+0.9
4,972,930	+		PP_4380	0.61	-0.1
4,972,930	+		PP_4380	0.61	+3.1
4,972,931	-		PP_4380	0.61	+2.7
4,972,931	-		PP_4380	0.61	+0.0
4,973,009	+		PP_4380	0.66	+0.9
4,973,009	+		PP_4380	0.66	+0.7
4,973,010	-		PP_4380	0.66	-0.6
4,973,081	+		PP_4380	0.70	+0.4
4,973,081	+		PP_4380	0.70	+0.6
4,973,082	-		PP_4380	0.70	+1.4
4,973,082	-		PP_4380	0.70	+0.6
4,973,087	+		PP_4380	0.71	-1.1
4,973,087	+		PP_4380	0.71	+1.0
4,973,087	+		PP_4380	0.71	+0.0
4,973,087	+		PP_4380	0.71	+0.9
4,973,087	+		PP_4380	0.71	-0.2
4,973,088	-		PP_4380	0.71	+0.2
4,973,088	-		PP_4380	0.71	+0.2
4,973,088	-		PP_4380	0.71	+0.2
4,973,088	-		PP_4380	0.71	+0.3
4,973,088	-		PP_4380	0.71	+1.4
4,973,088	-		PP_4380	0.71	+0.3
4,973,088	-		PP_4380	0.71	+0.7
4,973,088	-		PP_4380	0.71	+0.2
4,973,088	-		PP_4380	0.71	+1.0
4,973,111	+		PP_4380	0.72	-0.6
4,973,111	+		PP_4380	0.72	+0.5
4,973,112	-		PP_4380	0.72	+1.3
4,973,112	-		PP_4380	0.72	-0.4
4,973,112	-		PP_4380	0.72	+0.7
4,973,147	+		PP_4380	0.74	+1.2
4,973,147	+		PP_4380	0.74	+0.4
4,973,147	+		PP_4380	0.74	+0.8
4,973,148	-		PP_4380	0.74	-0.2
4,973,148	-		PP_4380	0.74	+0.7
4,973,148	-		PP_4380	0.74	+0.1
4,973,148	-		PP_4380	0.74	+1.0
4,973,148	-		PP_4380	0.74	-1.2
4,973,226	+		PP_4380	0.79	+0.7
4,973,364	-		PP_4380	0.88	-0.6
4,973,364	-		PP_4380	0.88	-0.2
4,973,470	-				+2.2
4,973,489	+				+1.5
4,973,489	+				+1.2
4,973,490	-				+0.9
4,973,502	-				+0.7
4,973,502	-				-0.6
4,973,502	-				-0.3
4,973,505	+				+0.4
4,973,505	+				-0.4
4,973,505	+				-0.5
4,973,505	+				-1.0
4,973,506	-				+1.3
4,973,506	-				+0.9
4,973,522	+				-0.2
4,973,562	+				+0.1
4,973,562	+				+0.2
4,973,563	-				-0.7
4,973,572	+				+0.9
4,973,628	+				-0.1
4,973,628	+				+1.4
4,973,629	-				+1.1
4,973,629	-				-0.1
4,973,629	-				+0.2
4,973,631	+				+1.2
4,973,632	-				+0.7
4,973,632	-				+1.7
4,973,911	+		PP_4381	0.17	+0.5
4,973,911	+		PP_4381	0.17	+0.4
4,973,911	+		PP_4381	0.17	+0.4
4,973,911	+		PP_4381	0.17	+0.3
4,973,975	-		PP_4381	0.20	+1.1
4,974,076	-		PP_4381	0.25	+0.2
4,974,102	+		PP_4381	0.26	+1.6
4,974,103	-		PP_4381	0.27	+0.2
4,974,198	+		PP_4381	0.31	+0.8
4,974,198	+		PP_4381	0.31	+0.8
4,974,198	+		PP_4381	0.31	+0.8
4,974,199	-		PP_4381	0.31	+0.2
4,974,199	-		PP_4381	0.31	+1.6
4,974,199	-		PP_4381	0.31	+0.3
4,974,199	-		PP_4381	0.31	-0.2
4,974,199	-		PP_4381	0.31	+0.9
4,974,202	+		PP_4381	0.31	-0.6
4,974,203	-				-0.1
4,974,203	-		PP_4381	0.31	-0.4
4,974,203	-		PP_4381	0.31	+1.0
4,974,203	-		PP_4381	0.31	+1.0
4,974,203	-		PP_4381	0.31	+1.5
4,974,203	-		PP_4381	0.31	+0.7
4,974,223	+		PP_4381	0.32	+0.7
4,974,223	+		PP_4381	0.32	+0.6
4,974,223	+		PP_4381	0.32	-1.1
4,974,223	+		PP_4381	0.32	+0.3
4,974,224	-		PP_4381	0.32	-0.4
4,974,413	+		PP_4381	0.42	-0.9
4,974,413	+		PP_4381	0.42	+1.2
4,974,414	-		PP_4381	0.42	+0.6
4,974,484	-		PP_4381	0.45	+0.9
4,974,484	-		PP_4381	0.45	+0.5
4,974,513	+		PP_4381	0.47	+0.7
4,974,513	+		PP_4381	0.47	+0.4
4,974,519	+		PP_4381	0.47	+1.4
4,974,520	-		PP_4381	0.47	+0.1
4,974,520	-		PP_4381	0.47	+0.9
4,974,688	+		PP_4381	0.55	+0.4
4,974,688	+		PP_4381	0.55	+1.5
4,974,828	+		PP_4381	0.62	+0.1
4,974,829	-		PP_4381	0.62	+1.0
4,974,829	-		PP_4381	0.62	+1.3
4,974,829	-		PP_4381	0.62	+0.8
4,974,931	-		PP_4381	0.67	+1.2
4,974,931	-		PP_4381	0.67	+2.3
4,974,939	+		PP_4381	0.67	+0.3
4,974,939	+		PP_4381	0.67	+1.6
4,974,940	-		PP_4381	0.67	+0.6
4,974,940	-		PP_4381	0.67	-0.6
4,974,940	-		PP_4381	0.67	+1.1
4,974,940	-		PP_4381	0.67	+0.1
4,974,940	-		PP_4381	0.67	-1.1
4,974,940	-		PP_4381	0.67	-0.7
4,974,971	+		PP_4381	0.69	-0.8
4,975,068	+		PP_4381	0.74	+0.4
4,975,069	-		PP_4381	0.74	+0.4
4,975,069	-		PP_4381	0.74	+0.6
4,975,396	-		PP_4381	0.90	-0.4
4,975,396	-		PP_4381	0.90	+0.0
4,975,396	-		PP_4381	0.90	+1.7
4,975,404	+				+1.3
4,975,404	+				+1.5
4,975,404	+				-0.8
4,975,405	-				-0.3
4,975,405	-				+0.7
4,975,405	-				+0.9
4,975,504	-				+0.6
4,975,534	+				-0.8
4,975,608	+				+0.8
4,975,608	+				-0.7
4,975,617	+				+0.7
4,975,619	+				+0.1
4,975,620	-				-0.0
4,975,620	-				+0.5
4,975,647	+				-0.7
4,975,648	-				-3.5
4,975,648	-				-0.9
4,975,717	-				-0.0
4,975,782	+		PP_4382	0.14	+1.5
4,975,782	+		PP_4382	0.14	+1.8
4,975,807	+		PP_4382	0.17	-0.3
4,975,808	-		PP_4382	0.17	+1.0
4,975,833	+		PP_4382	0.19	+1.0
4,975,834	-		PP_4382	0.19	-0.4
4,975,842	+		PP_4382	0.20	+0.6
4,975,842	+		PP_4382	0.20	-0.8
4,975,843	-		PP_4382	0.20	+0.9
4,976,031	+		PP_4382	0.36	+0.8
4,976,429	-		PP_4382	0.70	+2.1
4,976,532	+		PP_4382	0.79	+0.5
4,976,532	+		PP_4382	0.79	-0.2
4,976,532	+		PP_4382	0.79	+0.6
4,976,532	+		PP_4382	0.79	+0.4
4,976,532	+		PP_4382	0.79	+0.3
4,976,533	-		PP_4382	0.79	+0.4
4,976,533	-		PP_4382	0.79	+0.7
4,976,533	-		PP_4382	0.79	+0.6
4,976,533	-		PP_4382	0.79	+0.7
4,976,544	+		PP_4382	0.80	+0.4