Strain Fitness in Pseudomonas putida KT2440 around PP_3671

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,171,554	+		PP_3670	0.35	-1.1
4,171,555	-		PP_3670	0.35	-0.2
4,171,611	+		PP_3670	0.42	-0.1
4,171,612	-		PP_3670	0.42	-1.2
4,171,612	-		PP_3670	0.42	-0.1
4,171,612	-		PP_3670	0.42	+0.0
4,171,612	-		PP_3670	0.42	-0.6
4,171,661	-		PP_3670	0.47	+0.1
4,171,702	+		PP_3670	0.52	-1.6
4,171,703	-		PP_3670	0.52	-1.2
4,171,827	+		PP_3670	0.66	-0.6
4,171,828	-		PP_3670	0.66	-0.3
4,171,828	-		PP_3670	0.66	-2.6
4,171,893	-		PP_3670	0.74	-0.4
4,171,971	+		PP_3670	0.83	-1.2
4,171,971	+		PP_3670	0.83	-0.2
4,171,972	-		PP_3670	0.83	-0.5
4,171,972	-		PP_3670	0.83	-0.5
4,171,972	-		PP_3670	0.83	+1.2
4,172,209	-				+0.2
4,172,227	+				-0.3
4,172,227	+				+0.5
4,172,227	+				+0.0
4,172,228	-				+0.7
4,172,228	-				-0.9
4,172,312	+				+0.2
4,172,353	+				+0.4
4,172,353	+				-0.5
4,172,354	-				+0.2
4,172,610	-		PP_3671	0.29	+0.4
4,172,731	+		PP_3671	0.44	+1.2
4,172,791	+		PP_3671	0.51	+1.5
4,172,847	+		PP_3671	0.58	+0.5
4,172,848	-		PP_3671	0.58	+0.2
4,172,848	-		PP_3671	0.58	+0.1
4,172,848	-		PP_3671	0.58	+1.3
4,172,916	+		PP_3671	0.67	-0.2
4,172,916	+		PP_3671	0.67	+0.5
4,172,917	-		PP_3671	0.67	-0.2
4,173,264	+		PP_3672	0.10	+0.2
4,173,264	+		PP_3672	0.10	-0.3
4,173,489	+		PP_3672	0.49	+0.1
4,173,653	-		PP_3672	0.78	-0.0
4,173,653	-		PP_3672	0.78	-0.3
4,173,826	-				-1.2
4,173,828	+				+0.3
4,173,842	-				+1.1
4,173,849	-				+0.5
4,173,850	+				-0.3
4,173,851	-				-0.0
4,173,897	+				+0.4
4,173,897	+				+0.5
4,173,898	-				+0.8
4,173,904	-				-0.5
4,173,904	-				-0.6
4,173,910	-				+0.2
4,173,923	+				-0.7
4,173,923	+				+0.6
4,173,923	+				-0.8
4,173,954	+				-1.1
4,173,955	-				-0.1
4,173,955	-				+0.5
4,174,014	+				+0.2
4,174,028	+				-0.6
4,174,036	+				-2.0
4,174,036	+				+0.1
4,174,036	+				-1.2
4,174,036	+				+0.2
4,174,036	+				+0.8
4,174,036	+				-2.7
4,174,036	+				+0.4
4,174,036	+				-0.4
4,174,037	-				-0.8
4,174,037	-				-0.1
4,174,068	+				+1.6
4,174,068	+				-1.0
4,174,068	+				+0.1
4,174,069	-				-0.5
4,174,069	-				+0.4
4,174,179	+				+0.3
4,174,179	+				+0.6
4,174,180	-				+0.4