Strain Fitness in Pseudomonas putida KT2440 around PP_3670

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,170,380	+		PP_3669	0.11	-1.1
4,170,674	-		PP_3669	0.44	-0.2
4,170,674	-		PP_3669	0.44	+0.8
4,170,674	-		PP_3669	0.44	+0.5
4,170,733	+		PP_3669	0.50	+1.1
4,170,733	+		PP_3669	0.50	-0.4
4,170,734	-		PP_3669	0.50	+0.5
4,170,744	+		PP_3669	0.51	-0.1
4,170,744	+		PP_3669	0.51	-0.1
4,170,744	+		PP_3669	0.51	-0.3
4,170,744	+		PP_3669	0.51	-1.5
4,170,744	+		PP_3669	0.51	-0.3
4,170,744	+		PP_3669	0.51	+0.9
4,170,745	-		PP_3669	0.51	+0.3
4,170,745	-		PP_3669	0.51	+0.4
4,170,745	-		PP_3669	0.51	-0.8
4,170,746	+		PP_3669	0.52	+0.3
4,170,747	-		PP_3669	0.52	+0.8
4,170,747	-		PP_3669	0.52	-0.1
4,170,747	-		PP_3669	0.52	-0.2
4,170,793	+		PP_3669	0.57	+0.2
4,170,793	+		PP_3669	0.57	-0.2
4,170,794	-		PP_3669	0.57	-0.6
4,170,794	-		PP_3669	0.57	+1.1
4,170,794	-		PP_3669	0.57	+1.3
4,170,794	-		PP_3669	0.57	+0.7
4,170,794	-		PP_3669	0.57	-0.1
4,170,794	-		PP_3669	0.57	+0.4
4,170,794	-		PP_3669	0.57	+0.9
4,170,799	+		PP_3669	0.57	-0.6
4,170,850	-		PP_3669	0.63	+1.1
4,171,020	+		PP_3669	0.82	-0.6
4,171,020	+		PP_3669	0.82	-1.6
4,171,020	+		PP_3669	0.82	-0.2
4,171,020	+		PP_3669	0.82	+0.1
4,171,021	-		PP_3669	0.82	-0.1
4,171,214	-				-0.1
4,171,223	-				-0.6
4,171,223	-				+0.1
4,171,245	+				+0.5
4,171,246	-				+0.1
4,171,335	+		PP_3670	0.10	-1.0
4,171,554	+		PP_3670	0.35	-1.1
4,171,555	-		PP_3670	0.35	-0.2
4,171,611	+		PP_3670	0.42	-0.1
4,171,612	-		PP_3670	0.42	-1.2
4,171,612	-		PP_3670	0.42	-0.1
4,171,612	-		PP_3670	0.42	+0.0
4,171,612	-		PP_3670	0.42	-0.6
4,171,661	-		PP_3670	0.47	+0.1
4,171,702	+		PP_3670	0.52	-1.6
4,171,703	-		PP_3670	0.52	-1.2
4,171,827	+		PP_3670	0.66	-0.6
4,171,828	-		PP_3670	0.66	-0.3
4,171,828	-		PP_3670	0.66	-2.6
4,171,893	-		PP_3670	0.74	-0.4
4,171,971	+		PP_3670	0.83	-1.2
4,171,971	+		PP_3670	0.83	-0.2
4,171,972	-		PP_3670	0.83	-0.5
4,171,972	-		PP_3670	0.83	-0.5
4,171,972	-		PP_3670	0.83	+1.2
4,172,209	-				+0.2
4,172,227	+				-0.3
4,172,227	+				+0.5
4,172,227	+				+0.0
4,172,228	-				+0.7
4,172,228	-				-0.9
4,172,312	+				+0.2
4,172,353	+				+0.4
4,172,353	+				-0.5
4,172,354	-				+0.2
4,172,610	-		PP_3671	0.29	+0.4
4,172,731	+		PP_3671	0.44	+1.2
4,172,791	+		PP_3671	0.51	+1.5
4,172,847	+		PP_3671	0.58	+0.5
4,172,848	-		PP_3671	0.58	+0.2
4,172,848	-		PP_3671	0.58	+0.1
4,172,848	-		PP_3671	0.58	+1.3
4,172,916	+		PP_3671	0.67	-0.2
4,172,916	+		PP_3671	0.67	+0.5
4,172,917	-		PP_3671	0.67	-0.2