Strain Fitness in Pseudomonas putida KT2440 around PP_3456

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,915,306	+		PP_3455	0.23	-0.1
3,915,306	+		PP_3455	0.23	+0.6
3,915,306	+		PP_3455	0.23	-0.1
3,915,307	-				-0.6
3,915,307	-		PP_3455	0.23	-0.9
3,915,307	-		PP_3455	0.23	+0.2
3,915,307	-		PP_3455	0.23	+0.1
3,915,307	-		PP_3455	0.23	+0.6
3,915,307	-		PP_3455	0.23	-0.7
3,915,458	+		PP_3455	0.36	-0.1
3,915,459	-		PP_3455	0.36	+1.5
3,915,459	-		PP_3455	0.36	-1.1
3,915,909	-		PP_3455	0.75	+1.3
3,915,909	-		PP_3455	0.75	+1.3
3,916,195	+				-0.2
3,916,196	-				-1.2
3,916,196	-				+0.3
3,916,322	-				+0.3
3,916,363	+				-1.6
3,916,696	-		PP_3456	0.15	+0.5
3,916,747	+		PP_3456	0.17	+0.2
3,916,747	+		PP_3456	0.17	-3.4
3,916,748	-		PP_3456	0.17	+0.4
3,916,748	-		PP_3456	0.17	+0.8
3,916,748	-		PP_3456	0.17	+0.3
3,916,748	-		PP_3456	0.17	+0.8
3,916,824	-		PP_3456	0.19	+1.6
3,917,045	-		PP_3456	0.26	+0.9
3,917,045	-		PP_3456	0.26	+1.0
3,917,045	-		PP_3456	0.26	-0.6
3,917,182	+		PP_3456	0.31	+0.4
3,917,182	+		PP_3456	0.31	+0.4
3,917,182	+		PP_3456	0.31	+1.1
3,917,306	-		PP_3456	0.35	-0.2
3,917,570	+		PP_3456	0.43	+0.3
3,917,570	+		PP_3456	0.43	+0.9
3,917,614	+		PP_3456	0.45	+0.8
3,917,614	+		PP_3456	0.45	-0.0
3,917,614	+		PP_3456	0.45	+0.2
3,917,615	-		PP_3456	0.45	+0.4
3,917,833	+		PP_3456	0.52	+0.9
3,917,872	+		PP_3456	0.53	-0.6
3,917,892	+		PP_3456	0.53	+0.4
3,917,981	+		PP_3456	0.56	+0.0
3,918,194	-		PP_3456	0.63	+1.2
3,918,472	+		PP_3456	0.72	+0.5
3,918,472	+		PP_3456	0.72	+0.1
3,919,593	-		PP_3457	0.32	-0.1
3,919,825	-		PP_3457	0.72	-2.2
3,919,947	+				+0.6
3,920,242	+				-0.4
3,920,242	+				-0.4
3,920,242	+				+0.2
3,920,301	-		PP_3458	0.13	-0.4