Strain Fitness in Pseudomonas putida KT2440 around PP_3434

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,889,905	-		PP_3433	0.24	-0.5
3,889,905	-		PP_3433	0.24	-0.4
3,890,129	+		PP_3433	0.45	-0.3
3,890,129	+		PP_3433	0.45	+0.5
3,890,150	+		PP_3433	0.47	+0.1
3,890,184	-		PP_3433	0.50	+0.2
3,890,206	-		PP_3433	0.52	-0.9
3,890,206	-		PP_3433	0.52	+1.2
3,890,217	-		PP_3433	0.53	-0.2
3,890,224	-		PP_3433	0.54	-1.4
3,890,306	+		PP_3433	0.62	-0.6
3,890,306	+		PP_3433	0.62	-0.2
3,890,306	+		PP_3433	0.62	-0.0
3,890,307	-		PP_3433	0.62	+0.1
3,890,310	+		PP_3433	0.62	-0.8
3,890,310	+		PP_3433	0.62	-0.3
3,890,342	+		PP_3433	0.65	+0.2
3,890,343	-		PP_3433	0.65	+0.0
3,890,343	-		PP_3433	0.65	+0.0
3,890,343	-		PP_3433	0.65	+0.9
3,890,444	+		PP_3433	0.74	-0.0
3,890,445	-		PP_3433	0.75	+2.2
3,890,445	-		PP_3433	0.75	+0.0
3,890,445	-		PP_3433	0.75	-0.4
3,890,485	+		PP_3433	0.78	-0.7
3,890,514	-		PP_3433	0.81	+0.2
3,890,638	+				+1.0
3,890,639	-				-0.5
3,890,641	+				-0.4
3,890,641	+				-1.3
3,890,642	-				+0.1
3,890,709	+				-0.5
3,890,709	+				-0.3
3,890,709	+				+0.9
3,890,709	+				+0.4
3,890,709	+				-2.4
3,890,709	+				+0.7
3,890,710	-				-0.6
3,890,815	+		PP_3434	0.65	-0.3
3,890,823	+		PP_3434	0.72	+1.3
3,890,824	-		PP_3434	0.73	+0.2
3,890,844	+				+1.1
3,890,845	+				-0.6
3,890,845	+				+0.9
3,890,845	+				-1.6
3,890,846	-				-0.2
3,890,846	-				-0.5
3,890,846	-				-2.0
3,890,846	-				-0.1
3,890,846	-				-0.5
3,890,852	+				+0.3
3,890,852	+				-2.2
3,890,852	+				+0.2
3,890,853	-				-0.2
3,890,853	-				+0.4
3,890,853	-				-2.0
3,890,853	-				-0.6
3,890,853	-				-0.2
3,890,853	-				+0.9
3,890,853	-				-0.5
3,890,898	+				+0.4
3,890,898	+				-0.0
3,890,899	-				+0.4
3,890,899	-				+0.7
3,890,899	-				+0.4
3,890,981	-				+0.0
3,891,004	+				+0.2
3,891,026	-				+1.5
3,891,225	+		PP_3435	0.13	-0.2
3,891,335	+		PP_3435	0.20	-0.2
3,891,336	-		PP_3435	0.20	+0.5
3,891,386	+		PP_3435	0.23	-0.5
3,891,387	-		PP_3435	0.23	-0.8
3,891,403	-		PP_3435	0.24	-0.4
3,891,452	+		PP_3435	0.27	-1.0
3,891,453	-		PP_3435	0.27	-0.2
3,891,453	-		PP_3435	0.27	-1.8
3,891,674	+		PP_3435	0.41	-1.9
3,891,702	+		PP_3435	0.43	-0.0
3,891,702	+		PP_3435	0.43	-1.9
3,891,703	-		PP_3435	0.43	-0.2