Strain Fitness in Pseudomonas putida KT2440 around PP_3398

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,849,666	+		PP_3397	0.63	+0.7
3,849,666	+		PP_3397	0.63	-0.0
3,849,667	-		PP_3397	0.63	-0.4
3,849,805	-		PP_3397	0.69	-2.0
3,849,808	+		PP_3397	0.69	+0.8
3,849,808	+		PP_3397	0.69	-0.5
3,849,809	-		PP_3397	0.69	-0.3
3,850,096	+		PP_3397	0.82	+1.2
3,850,096	+		PP_3397	0.82	+0.2
3,850,096	+		PP_3397	0.82	-0.7
3,850,096	+		PP_3397	0.82	-0.5
3,850,096	+		PP_3397	0.82	-2.0
3,850,096	+		PP_3397	0.82	-1.0
3,850,097	-		PP_3397	0.82	-1.7
3,850,098	+		PP_3397	0.82	-0.5
3,850,145	-		PP_3397	0.84	-0.4
3,850,145	-		PP_3397	0.84	+0.3
3,850,185	+		PP_3397	0.86	+0.1
3,850,185	+		PP_3397	0.86	+0.1
3,850,185	+		PP_3397	0.86	-0.0
3,850,407	-				-0.3
3,850,413	+				-0.3
3,850,413	+				-2.0
3,850,413	+				+0.3
3,850,490	+				-0.7
3,850,490	+				+0.5
3,850,491	-				+1.8
3,850,501	+				-2.9
3,850,502	-				+1.3
3,850,531	+				-1.5
3,850,532	-				+0.3
3,850,775	-		PP_3398	0.54	-0.1
3,850,775	-		PP_3398	0.54	+0.4
3,850,775	-		PP_3398	0.54	+1.0
3,850,985	-				-0.3
3,851,012	+				+0.3
3,851,013	-				+0.2
3,851,013	-				-1.5
3,851,013	-				-0.6
3,851,013	-				+1.1
3,851,013	-				+0.7
3,851,312	+		PP_3399	0.21	-1.7
3,851,313	-		PP_3399	0.21	-0.3
3,851,313	-		PP_3399	0.21	-0.1
3,851,528	+		PP_3399	0.36	-0.6
3,851,528	+		PP_3399	0.36	+0.4
3,851,528	+		PP_3399	0.36	+1.1
3,851,528	+		PP_3399	0.36	-0.1
3,851,528	+		PP_3399	0.36	-1.2
3,851,528	+		PP_3399	0.36	+0.5
3,851,528	+		PP_3399	0.36	-0.6
3,851,528	+		PP_3399	0.36	-0.9
3,851,529	-		PP_3399	0.36	-0.6
3,851,529	-		PP_3399	0.36	-0.3
3,851,529	-		PP_3399	0.36	+0.7
3,851,603	+		PP_3399	0.41	+0.1
3,851,603	+		PP_3399	0.41	+0.4
3,851,604	-		PP_3399	0.41	+0.4
3,851,651	+		PP_3399	0.44	+0.0
3,851,741	+		PP_3399	0.51	-0.6
3,851,742	-		PP_3399	0.51	-1.5
3,851,742	-		PP_3399	0.51	+0.1
3,851,743	+		PP_3399	0.51	+0.6
3,851,886	-		PP_3399	0.61	-1.0
3,851,935	+		PP_3399	0.64	-0.9
3,851,935	+		PP_3399	0.64	+0.1
3,851,935	+		PP_3399	0.64	+1.3
3,851,936	-		PP_3399	0.64	-1.1