Strain Fitness in Pseudomonas putida KT2440 around PP_3041

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,424,474	-				-0.2
3,424,518	+				-0.2
3,424,538	+				+1.0
3,424,539	-				+1.2
3,424,539	-				+1.8
3,424,622	+				-0.4
3,424,647	+				+0.8
3,424,691	+				+0.8
3,424,692	-				-1.8
3,424,715	+				-0.0
3,424,716	-				-0.6
3,424,716	-				-0.9
3,424,730	+				-0.8
3,424,731	-				-0.5
3,424,731	-				+0.4
3,424,767	+				+0.2
3,424,774	+				-0.3
3,424,775	-				-0.9
3,424,790	+				-0.5
3,424,791	-				-0.4
3,424,823	+				+0.2
3,424,946	+				-1.5
3,424,946	+				+1.0
3,424,946	+				-2.3
3,424,946	+				-0.1
3,424,947	-				+0.2
3,425,193	-		PP_3040	0.77	+0.3
3,425,200	+		PP_3040	0.79	+0.4
3,425,201	-		PP_3040	0.80	-0.3
3,425,201	-				+2.0
3,425,371	+				+1.0
3,425,415	+				-0.3
3,425,499	+		PP_3041	0.10	+0.1
3,425,499	+		PP_3041	0.10	+1.0
3,425,499	+		PP_3041	0.10	-2.2
3,425,500	-		PP_3041	0.10	+0.7
3,425,500	-		PP_3041	0.10	-1.7
3,425,763	+		PP_3041	0.53	-0.0
3,425,793	+		PP_3041	0.58	+0.6
3,425,897	-		PP_3041	0.75	+1.2
3,425,897	-		PP_3041	0.75	+1.2
3,426,035	+				+1.2
3,426,051	+				+0.2
3,426,051	+				-0.0
3,426,052	-				+0.6
3,426,129	-				+0.2
3,426,129	-				-0.5
3,426,129	-				+0.2
3,426,154	+				-0.8
3,426,154	+				-0.5
3,426,154	+				+0.7
3,426,155	-				-0.4
3,426,213	+				+0.0
3,426,213	+				-0.4
3,426,214	-				-1.6
3,426,220	+				-0.7
3,426,234	+				-0.4
3,426,235	-				-0.2
3,426,235	-				+0.9
3,426,285	-		PP_3042	0.11	-0.6
3,426,285	-		PP_3042	0.11	-0.1
3,426,368	+		PP_3042	0.16	+0.4
3,426,369	-		PP_3042	0.16	+0.3
3,426,369	-		PP_3042	0.16	+0.4
3,426,480	+		PP_3042	0.21	-0.9
3,426,481	-		PP_3042	0.21	-0.9
3,426,484	-		PP_3042	0.21	-0.3
3,426,551	+		PP_3042	0.24	+0.1
3,426,551	+		PP_3042	0.24	-0.2
3,426,552	-		PP_3042	0.25	-0.5
3,426,571	+		PP_3042	0.25	+0.9
3,426,572	-		PP_3042	0.26	+0.1
3,426,578	-		PP_3042	0.26	+0.3
3,426,682	+		PP_3042	0.31	-1.6
3,426,711	+		PP_3042	0.32	-0.1
3,426,712	-		PP_3042	0.32	-2.0
3,426,712	-		PP_3042	0.32	-0.1
3,426,733	+		PP_3042	0.33	-1.8
3,426,734	-		PP_3042	0.33	+1.2
3,426,757	+		PP_3042	0.35	+0.1
3,426,758	-		PP_3042	0.35	+0.3
3,426,760	+		PP_3042	0.35	-0.6
3,426,760	+		PP_3042	0.35	-0.5
3,426,761	-		PP_3042	0.35	+1.3
3,426,761	-		PP_3042	0.35	+1.1
3,426,761	-		PP_3042	0.35	-0.2
3,426,761	-		PP_3042	0.35	+1.2
3,426,761	-		PP_3042	0.35	+0.5
3,426,761	-		PP_3042	0.35	+0.9
3,426,761	-		PP_3042	0.35	-0.5
3,426,977	-		PP_3042	0.45	-0.2
3,427,032	+		PP_3042	0.48	-0.4
3,427,032	+		PP_3042	0.48	-0.1