Strain Fitness in Pseudomonas putida KT2440 around PP_2344

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,674,077	+				-1.2
2,674,221	+		PP_2343	0.28	-0.2
2,674,221	+		PP_2343	0.28	+0.4
2,674,221	+		PP_2343	0.28	-0.1
2,674,221	+		PP_2343	0.28	+1.1
2,674,229	+		PP_2343	0.29	+0.6
2,674,229	+		PP_2343	0.29	+0.0
2,674,230	-		PP_2343	0.29	+0.3
2,674,234	-		PP_2343	0.30	+0.7
2,674,234	-		PP_2343	0.30	+0.4
2,674,259	-		PP_2343	0.33	+0.2
2,674,342	+		PP_2343	0.44	+0.5
2,674,343	-		PP_2343	0.44	+0.4
2,674,343	-		PP_2343	0.44	-0.2
2,674,343	-		PP_2343	0.44	+0.7
2,674,449	+		PP_2343	0.59	-1.2
2,674,449	+		PP_2343	0.59	+0.4
2,674,449	+		PP_2343	0.59	+0.2
2,674,450	-		PP_2343	0.59	-0.2
2,674,453	+		PP_2343	0.59	-0.3
2,674,453	+		PP_2343	0.59	-1.3
2,674,453	+		PP_2343	0.59	-0.4
2,674,453	+		PP_2343	0.59	-0.1
2,674,453	+		PP_2343	0.59	-0.0
2,674,453	+		PP_2343	0.59	-0.3
2,674,454	-		PP_2343	0.60	+0.9
2,674,454	-		PP_2343	0.60	+0.7
2,674,460	-		PP_2343	0.60	+0.4
2,674,571	+		PP_2343	0.76	+0.2
2,674,571	+		PP_2343	0.76	-1.3
2,674,572	-		PP_2343	0.76	+0.5
2,674,581	-		PP_2343	0.77	+0.6
2,674,581	-		PP_2343	0.77	-0.5
2,674,610	+		PP_2343	0.81	+0.8
2,674,611	-		PP_2343	0.81	-2.3
2,674,923	-				+0.5
2,674,958	+				-4.1
2,674,958	+				+1.6
2,674,958	+				+0.2
2,674,959	-				+0.1
2,674,962	-				+1.1
2,675,037	+				-0.5
2,675,037	+				-0.2
2,675,038	-				+0.8
2,675,056	+				+0.5
2,675,057	-				+0.4
2,675,057	-				+3.1
2,675,146	+				+0.3
2,675,147	-				-1.3
2,675,236	+		PP_2344	0.17	-0.7
2,675,237	-		PP_2344	0.17	+0.3
2,675,237	-		PP_2344	0.17	-0.4
2,675,350	+		PP_2344	0.27	+0.2
2,675,350	+		PP_2344	0.27	+0.9
2,675,375	-		PP_2344	0.30	-0.7
2,675,392	+		PP_2344	0.31	+0.5
2,675,393	-		PP_2344	0.31	-1.6
2,675,393	-		PP_2344	0.31	+0.5
2,675,393	-		PP_2344	0.31	-1.8
2,675,525	-		PP_2344	0.44	-0.5
2,675,842	+		PP_2344	0.73	-0.6
2,675,842	+		PP_2344	0.73	-0.9
2,675,842	+		PP_2344	0.73	-0.5
2,675,844	+		PP_2344	0.73	-0.4
2,675,844	+		PP_2344	0.73	-2.5
2,675,844	+		PP_2344	0.73	+0.4
2,675,845	-		PP_2344	0.73	-3.5
2,675,845	-		PP_2344	0.73	-1.6
2,675,845	-		PP_2344	0.73	-0.2
2,675,845	-		PP_2344	0.73	-0.9
2,675,845	-		PP_2344	0.73	-0.9
2,675,845	-		PP_2344	0.73	+0.1
2,676,152	+				+0.5
2,676,152	+				+0.7
2,676,153	-				+0.7
2,676,188	+				+0.9
2,676,188	+				-1.4
2,676,188	+				+0.0
2,676,189	-				+0.3
2,676,189	-				-0.7
2,676,189	-				+0.7
2,676,189	-				+0.6
2,676,189	-				-0.1
2,676,199	+				-0.2
2,676,199	+				-0.5
2,676,199	+				-0.6
2,676,199	+				+0.7
2,676,200	-				+0.1
2,676,200	-				+0.5
2,676,200	-				+0.4
2,676,200	-				-0.5
2,676,200	-				-0.7
2,676,210	-				-1.6
2,676,210	-				-0.7
2,676,270	-				+0.5
2,676,309	+				-0.5
2,676,309	+				+1.2
2,676,310	-				+1.5
2,676,310	-				-0.7
2,676,310	-				-0.5
2,676,323	+				-1.1
2,676,324	-				+0.6
2,676,570	+		PP_2345	0.64	+0.6
2,676,580	-		PP_2345	0.67	-0.4
2,676,580	-		PP_2345	0.67	-0.3
2,676,580	-		PP_2345	0.67	-1.4
2,676,585	+		PP_2345	0.69	+0.5
2,676,585	+				-1.2
2,677,024	-				+0.6
2,677,024	-				+0.3
2,677,068	-		PP_2347	0.11	-0.6
2,677,107	-		PP_2347	0.17	-1.6