Strain Fitness in Pseudomonas putida KT2440 around PP_1852

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,075,422	-				+0.6
2,075,507	-				-0.7
2,075,581	-		PP_5479	0.11	+0.7
2,075,581	-		PP_5479	0.11	-0.8
2,075,648	+		PP_5479	0.19	-0.3
2,075,891	+		PP_5479	0.46	+0.4
2,075,942	+		PP_5479	0.52	-0.4
2,075,942	+		PP_5479	0.52	-0.3
2,075,942	+		PP_5479	0.52	+0.0
2,075,943	-		PP_5479	0.52	-0.5
2,076,242	+		PP_5479	0.86	-0.1
2,076,283	+				-0.3
2,076,284	-				-1.2
2,076,284	-				+1.3
2,076,284	-				-3.2
2,076,284	-				-1.3
2,076,284	-				+1.6
2,076,361	+				-0.5
2,076,362	-				+0.5
2,076,362	-				+0.3
2,076,362	-				-0.2
2,076,362	-				+0.4
2,076,367	+				+0.5
2,076,430	+				+0.3
2,076,430	+				-0.4
2,076,430	+				-0.2
2,076,430	+				+0.3
2,076,430	+				-0.0
2,076,431	-				+1.7
2,076,431	-				-1.2
2,076,453	+				-1.0
2,076,455	+				+1.7
2,076,456	-				+0.6
2,076,456	-				+1.1
2,076,479	+				+0.1
2,076,479	+				+1.2
2,076,687	-		PP_1852	0.37	-0.4
2,076,744	+		PP_1852	0.45	+0.7
2,076,744	+		PP_1852	0.45	-0.6
2,076,762	+		PP_1852	0.47	-0.5
2,076,763	-		PP_1852	0.47	-1.2
2,076,763	-		PP_1852	0.47	-1.0
2,076,764	+		PP_1852	0.47	+0.2
2,076,764	+		PP_1852	0.47	+0.6
2,076,764	+		PP_1852	0.47	+0.2
2,076,764	+		PP_1852	0.47	+0.4
2,076,764	+		PP_1852	0.47	-0.8
2,076,764	+		PP_1852	0.47	+0.1
2,076,764	+		PP_1852	0.47	-0.9
2,076,764	+		PP_1852	0.47	-0.9
2,076,764	+		PP_1852	0.47	-1.2
2,076,764	+		PP_1852	0.47	+1.5
2,076,765	-		PP_1852	0.47	-0.2
2,076,765	-		PP_1852	0.47	+0.4
2,076,765	-		PP_1852	0.47	-0.3
2,076,765	-		PP_1852	0.47	-0.9
2,076,765	-		PP_1852	0.47	-2.3
2,076,803	-		PP_1852	0.53	+0.8
2,076,819	+		PP_1852	0.55	-1.8
2,076,819	+		PP_1852	0.55	-1.8
2,076,820	-		PP_1852	0.55	-0.3
2,076,820	-		PP_1852	0.55	-3.3
2,076,820	-		PP_1852	0.55	-0.5
2,076,820	-		PP_1852	0.55	+0.5
2,077,040	+		PP_1852	0.84	-3.7
2,077,040	+		PP_1852	0.84	+0.5
2,077,040	+		PP_1852	0.84	-0.4
2,077,040	+		PP_1852	0.84	+0.2
2,077,041	-		PP_1852	0.84	+0.6
2,077,041	-		PP_1852	0.84	-3.4
2,077,041	-		PP_1852	0.84	-1.2
2,077,041	-		PP_1852	0.84	-3.3
2,077,041	-		PP_1852	0.84	+0.7
2,077,041	-		PP_1852	0.84	-2.2
2,077,086	+				-1.9
2,077,086	+				-1.2
2,077,086	+				-1.4
2,077,087	-				+0.7
2,077,087	-				+0.7
2,077,087	-				-0.3
2,077,087	-				+0.2
2,077,143	+				-1.1
2,077,144	-				-0.0
2,077,144	-				+1.0
2,077,144	-				-1.3
2,077,231	+				-1.2
2,077,232	-				+1.1
2,077,273	-				+0.1
2,077,435	+		PP_1853	0.17	+2.5
2,077,435	+		PP_1853	0.17	-0.5
2,077,435	+		PP_1853	0.17	-0.3
2,077,436	-		PP_1853	0.17	+0.2
2,077,436	-		PP_1853	0.17	+0.2
2,077,436	-		PP_1853	0.17	+1.1
2,077,438	+		PP_1853	0.17	-4.5
2,077,598	+		PP_1853	0.34	+0.8
2,077,598	+		PP_1853	0.34	+1.4
2,077,598	+		PP_1853	0.34	-1.3
2,077,598	+		PP_1853	0.34	-0.0
2,077,598	+		PP_1853	0.34	+0.3
2,077,599	-		PP_1853	0.34	+0.4
2,077,599	-		PP_1853	0.34	+0.7
2,077,599	-		PP_1853	0.34	-0.2
2,077,599	-		PP_1853	0.34	-0.0
2,077,599	-		PP_1853	0.34	-0.3
2,077,645	+		PP_1853	0.39	-0.7
2,077,816	-		PP_1853	0.57	+0.9
2,077,816	-		PP_1853	0.57	-0.6
2,078,031	-		PP_1853	0.80	+0.2
2,078,072	+		PP_1853	0.85	-0.2
2,078,072	+		PP_1853	0.85	-1.5
2,078,072	+		PP_1853	0.85	-0.3
2,078,072	+		PP_1853	0.85	+0.7
2,078,073	-		PP_1853	0.85	-0.5
2,078,073	-		PP_1853	0.85	-0.1
2,078,073	-		PP_1853	0.85	-0.6
2,078,089	+		PP_1853	0.86	-0.2
2,078,090	-		PP_1853	0.87	+1.2
2,078,100	-		PP_1853	0.88	-0.1
2,078,100	-		PP_1853	0.88	-0.4