Strain Fitness in Pseudomonas putida KT2440 around PP_1571

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,762,191	-		PP_1568	0.23	+0.3
1,762,366	+				+0.1
1,762,366	+				-0.6
1,762,366	+				-0.7
1,762,366	+				-0.3
1,762,367	-				-0.2
1,762,367	-				+0.8
1,762,367	-				+1.0
1,762,367	-				+0.4
1,762,551	+		PP_1569	0.39	-1.7
1,762,658	+		PP_1569	0.61	-0.1
1,762,658	+		PP_1569	0.61	-0.7
1,762,659	-		PP_1569	0.61	+1.1
1,762,683	-		PP_1569	0.66	+0.5
1,762,696	+		PP_1569	0.69	-0.6
1,762,696	+		PP_1569	0.69	-1.0
1,763,057	+		PP_1570	0.63	-0.4
1,763,058	-		PP_1570	0.63	-0.9
1,763,095	+		PP_1570	0.74	+0.3
1,763,095	+		PP_1570	0.74	+0.4
1,763,096	-		PP_1570	0.74	-0.1
1,763,096	-		PP_1570	0.74	-1.2
1,763,153	+				+0.7
1,763,153	+				+0.7
1,763,154	-				-1.7
1,763,154	-				-0.6
1,763,505	+		PP_1571	0.67	-0.0
1,763,546	-		PP_1571	0.76	+1.6
1,763,588	-		PP_1571	0.85	-0.6
1,763,604	-		PP_1571	0.88	+0.7
1,763,741	-		PP_1572	0.22	-0.7
1,763,779	+		PP_1572	0.33	+0.9
1,763,779	+		PP_1572	0.33	+0.7
1,763,780	-		PP_1572	0.33	+0.1
1,763,780	-		PP_1572	0.33	-0.7
1,763,819	-		PP_1572	0.43	-1.0
1,763,819	-		PP_1572	0.43	+0.1
1,763,938	+		PP_1572	0.76	+0.1
1,763,938	+		PP_1572	0.76	+1.6
1,763,938	+		PP_1572	0.76	+1.0
1,763,938	+		PP_1572	0.76	-3.1
1,763,938	+		PP_1572	0.76	-0.2
1,763,939	-		PP_1572	0.76	-0.1
1,763,987	-		PP_1572	0.89	+1.5
1,764,046	+				-0.0
1,764,123	+				+0.5
1,764,123	+				+0.5
1,764,123	+				+0.5
1,764,124	-				-1.0
1,764,153	-				-0.2
1,764,157	+				-1.0
1,764,157	+				-3.9
1,764,157	+				-0.0
1,764,158	-				-0.1
1,764,259	-		PP_1573	0.23	-0.1
1,764,259	-		PP_1573	0.23	+1.6
1,764,410	+		PP_1573	0.43	+0.3
1,764,411	-		PP_1573	0.43	+0.0
1,764,411	-		PP_1573	0.43	-0.3
1,764,411	-		PP_1573	0.43	+0.7
1,764,411	-		PP_1573	0.43	-0.0
1,764,475	-		PP_1573	0.52	-0.9
1,764,591	+		PP_1573	0.68	+1.5
1,764,594	-		PP_1573	0.68	-0.4
1,764,594	-		PP_1573	0.68	-1.3
1,764,594	-		PP_1573	0.68	+0.2
1,764,606	-		PP_1573	0.70	-1.1
1,764,647	+		PP_1573	0.75	-3.2
1,764,647	+		PP_1573	0.75	+0.2