Strain Fitness in Pseudomonas putida KT2440 around PP_1233

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,411,105	+		PP_1232	0.42	-0.5
1,411,105	+		PP_1232	0.42	-1.5
1,411,106	-		PP_1232	0.42	-2.1
1,411,106	-		PP_1232	0.42	+0.6
1,411,139	-		PP_1232	0.45	-1.5
1,411,187	+		PP_1232	0.48	-0.6
1,411,202	+		PP_1232	0.49	+0.8
1,411,202	+		PP_1232	0.49	+0.5
1,411,563	+		PP_1232	0.74	-0.3
1,411,573	+		PP_1232	0.75	-0.4
1,411,720	+		PP_1232	0.85	+1.3
1,411,738	+		PP_1232	0.86	-0.5
1,411,738	+		PP_1232	0.86	-0.4
1,411,739	-		PP_1232	0.86	+0.4
1,411,739	-		PP_1232	0.86	-0.8
1,411,926	+				-2.1
1,411,926	+				+0.5
1,411,926	+				-0.4
1,411,927	-				-0.7
1,411,927	-				-3.4
1,411,961	+				-0.2
1,411,961	+				-1.2
1,411,962	-				+0.1
1,411,965	+				+0.3
1,411,965	+				+0.9
1,411,966	-				-0.7
1,411,966	-				+0.5
1,411,966	-				-0.9
1,411,966	-				-0.5
1,411,966	-				+0.3
1,411,966	-				+1.3
1,411,970	+				-0.7
1,412,007	+				+1.4
1,412,062	+				+1.4
1,412,063	-				-0.1
1,412,176	+		PP_1233	0.50	+0.3
1,412,236	+		PP_1233	0.75	+1.4
1,412,270	+		PP_1233	0.89	+0.4
1,412,270	+		PP_1233	0.89	+0.6
1,412,270	+		PP_1233	0.89	+2.0
1,412,271	-		PP_1233	0.89	-0.1
1,412,272	+		PP_1233	0.90	-1.0
1,412,272	+		PP_1233	0.90	-1.8
1,412,272	+		PP_1233	0.90	+0.9
1,412,272	+		PP_1233	0.90	+0.7
1,412,272	+		PP_1233	0.90	-1.1
1,412,273	-				+1.1
1,412,273	-				-0.2
1,412,273	-				-0.7
1,412,273	-				+0.4
1,412,273	-				-0.9
1,412,276	+				-0.2
1,412,276	+				+1.9
1,412,276	+				+0.2
1,412,276	+				+0.1
1,412,276	+				-0.4
1,412,277	-				+0.2
1,412,350	+				+0.9
1,412,351	-				+0.8
1,412,351	-				-0.4
1,412,507	+		PP_1234	0.18	+0.5
1,412,511	+		PP_1234	0.18	+0.0
1,412,705	+		PP_1234	0.36	+0.3
1,412,705	+		PP_1234	0.36	-0.3
1,412,706	-		PP_1234	0.36	+0.2
1,412,706	-		PP_1234	0.36	+0.5
1,412,809	+		PP_1234	0.46	-1.8
1,412,809	+		PP_1234	0.46	-0.3
1,412,810	-		PP_1234	0.46	-0.1
1,412,885	-		PP_1234	0.53	-2.0
1,412,950	+		PP_1234	0.59	+0.5
1,412,950	+		PP_1234	0.59	-0.5
1,412,950	+		PP_1234	0.59	+0.5
1,412,950	+		PP_1234	0.59	-0.3
1,412,950	+		PP_1234	0.59	+1.1
1,412,950	+		PP_1234	0.59	+0.2
1,412,951	-		PP_1234	0.59	+0.1
1,412,998	+		PP_1234	0.64	+1.1
1,412,998	+		PP_1234	0.64	+1.0
1,412,998	+		PP_1234	0.64	-0.0
1,412,998	+		PP_1234	0.64	+0.6
1,412,999	-		PP_1234	0.64	+0.3
1,412,999	-		PP_1234	0.64	+0.8
1,412,999	-		PP_1234	0.64	+0.1
1,413,029	-		PP_1234	0.66	+0.4
1,413,029	-		PP_1234	0.66	-0.6
1,413,038	+		PP_1234	0.67	+0.7
1,413,039	-		PP_1234	0.67	-0.6
1,413,039	-		PP_1234	0.67	-0.1
1,413,076	+		PP_1234	0.71	-0.8
1,413,076	+		PP_1234	0.71	-0.1
1,413,076	+		PP_1234	0.71	-1.8
1,413,076	+		PP_1234	0.71	-1.0
1,413,077	-		PP_1234	0.71	-1.5
1,413,077	-		PP_1234	0.71	+1.0
1,413,154	+		PP_1234	0.78	-1.3
1,413,154	+		PP_1234	0.78	+0.0
1,413,154	+		PP_1234	0.78	-0.5
1,413,169	+		PP_1234	0.80	-1.8
1,413,252	+		PP_1234	0.87	-0.7
1,413,281	+				+0.7