Strain Fitness in Pseudomonas putida KT2440 around PP_1070

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,224,070	+				+0.4
1,224,166	+		PP_1069	0.24	+0.2
1,224,166	+		PP_1069	0.24	+0.7
1,224,167	-		PP_1069	0.24	+0.3
1,224,167	-		PP_1069	0.24	+0.5
1,224,168	+		PP_1069	0.24	+1.6
1,224,271	+		PP_1069	0.39	+0.8
1,224,272	-		PP_1069	0.40	-0.2
1,224,410	+		PP_1069	0.60	-0.4
1,224,454	+		PP_1069	0.67	+0.6
1,224,454	+		PP_1069	0.67	+0.5
1,224,455	-				+2.0
1,224,497	-		PP_1069	0.73	+0.7
1,224,497	-		PP_1069	0.73	-0.5
1,224,680	-				+0.8
1,224,769	+		PP_1070	0.12	+1.2
1,224,770	-		PP_1070	0.12	+1.6
1,224,770	-		PP_1070	0.12	+0.5
1,224,770	-		PP_1070	0.12	-0.4
1,224,770	-		PP_1070	0.12	+0.6
1,224,958	+		PP_1070	0.37	+2.5
1,224,958	+		PP_1070	0.37	+0.5
1,224,959	-		PP_1070	0.38	-0.9
1,224,959	-		PP_1070	0.38	+0.7
1,224,959	-		PP_1070	0.38	+0.7
1,225,172	-		PP_1070	0.66	+0.0
1,225,223	-		PP_1070	0.73	+0.4
1,225,351	+				-0.2
1,225,352	-				+1.0
1,225,363	+				+0.8
1,225,418	-				+1.0
1,225,418	-				-0.3
1,225,502	+				+0.1
1,225,503	-				+0.9
1,225,503	-				-0.2
1,225,509	+				+0.3
1,225,557	+				-0.3
1,225,557	+				+0.3
1,225,561	+				+0.0
1,225,561	+				-0.1
1,225,562	-				+0.6
1,225,695	-		PP_1071	0.14	-0.1
1,225,724	+		PP_1071	0.17	+0.9
1,226,058	-		PP_1071	0.53	-0.7
1,226,058	-		PP_1071	0.53	-0.2
1,226,206	-		PP_1071	0.69	-1.2
1,226,232	-		PP_1071	0.72	+0.2
1,226,232	-		PP_1071	0.72	+0.7
1,226,232	-		PP_1071	0.72	-0.4
1,226,232	-		PP_1071	0.72	+0.3
1,226,333	+		PP_1071	0.83	+0.2