Strain Fitness in Pseudomonas putida KT2440 around PP_1038

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,188,693	+				-0.5
1,188,694	-				+0.3
1,188,694	-				-0.2
1,188,694	-				+0.4
1,188,702	+				-1.4
1,188,703	-				+0.4
1,188,703	-				+0.2
1,188,790	-		PP_1038	0.29	+0.6
1,188,966	+		PP_1038	0.86	+1.1
1,188,981	+				-0.3
1,188,981	+				+0.4
1,188,982	-				+1.3
1,188,982	-				-0.4
1,188,982	-				-0.1
1,188,982	-				-0.6
1,189,053	+				+0.9
1,189,054	-				-1.9
1,189,054	-				-0.4
1,189,054	-				+0.4
1,189,218	+		PP_1039	0.22	-0.3
1,189,219	-				-1.1
1,189,219	-		PP_1039	0.22	-0.1
1,189,219	-		PP_1039	0.22	+0.0
1,189,219	-		PP_1039	0.22	-1.7
1,189,219	-		PP_1039	0.22	-0.2
1,189,219	-		PP_1039	0.22	+0.5
1,189,330	+		PP_1039	0.36	-0.9
1,189,342	-		PP_1039	0.38	-0.3
1,189,342	-		PP_1039	0.38	-1.9
1,189,446	+		PP_1039	0.52	-0.4
1,189,447	-		PP_1039	0.52	-0.4
1,189,447	-		PP_1039	0.52	-0.2
1,189,447	-		PP_1039	0.52	-0.6
1,189,447	-		PP_1039	0.52	-0.5
1,189,447	-		PP_1039	0.52	+0.2
1,189,667	+		PP_1039	0.81	-1.7
1,189,677	+		PP_1039	0.82	+0.5
1,189,677	+		PP_1039	0.82	+0.8
1,189,677	+		PP_1039	0.82	+0.8
1,189,678	-		PP_1039	0.82	-0.6
1,189,678	-		PP_1039	0.82	-0.2
1,189,678	-		PP_1039	0.82	+1.4
1,189,678	-		PP_1039	0.82	+1.0