Strain Fitness in Pseudomonas putida KT2440 around PP_0901

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,040,566	+				+0.1
1,040,566	+				-0.4
1,040,567	-				-1.1
1,040,668	-				+0.2
1,040,668	-				-1.0
1,040,670	+				-1.0
1,040,670	+				+0.1
1,040,670	+				+0.7
1,040,670	+				+0.3
1,040,670	+				+1.1
1,040,671	-				+2.4
1,040,671	-				+0.0
1,040,763	-		PP_0900	0.22	+0.2
1,040,786	+		PP_0900	0.25	+1.2
1,040,932	-		PP_0900	0.45	-1.1
1,041,168	+		PP_0900	0.77	+0.6
1,041,300	+				+0.6
1,041,459	+				+1.2
1,041,460	-				-0.8
1,041,460	-				-1.3
1,041,460	-				-0.3
1,041,467	-				+0.2
1,041,550	+				-3.4
1,041,590	+		PP_0901	0.11	-1.4
1,041,591	-		PP_0901	0.11	+0.1
1,041,651	-		PP_0901	0.19	+0.0
1,041,651	-		PP_0901	0.19	+2.3
1,041,695	+		PP_0901	0.26	-0.2
1,041,696	-		PP_0901	0.26	-0.2
1,041,696	-		PP_0901	0.26	-0.0
1,041,696	-		PP_0901	0.26	-0.5
1,041,921	-				+1.1
1,041,921	-		PP_0901	0.59	-0.2
1,041,999	+		PP_0901	0.70	-0.7
1,042,150	+				+0.8
1,042,151	-				-0.7
1,042,199	+				-0.0
1,042,200	-				-2.2
1,042,500	+		PP_0902	0.24	-0.2
1,042,536	+		PP_0902	0.26	-0.1
1,042,536	+		PP_0902	0.26	+0.4
1,042,537	-		PP_0902	0.26	-0.0
1,042,540	+				-1.2
1,042,540	+		PP_0902	0.27	-0.9
1,042,540	+		PP_0902	0.27	+0.5
1,042,540	+		PP_0902	0.27	-0.2
1,042,540	+		PP_0902	0.27	+0.2
1,042,541	-		PP_0902	0.27	-1.7
1,042,541	-		PP_0902	0.27	+0.2
1,042,714	+		PP_0902	0.40	-1.3
1,042,791	-		PP_0902	0.46	+0.9
1,042,883	+		PP_0902	0.53	+1.5
1,042,883	+		PP_0902	0.53	+1.0
1,042,935	-		PP_0902	0.57	-0.1
1,043,154	+		PP_0902	0.73	+0.8
1,043,155	-		PP_0902	0.74	-0.2
1,043,155	-		PP_0902	0.74	+0.1