Experiment: R2A with Fusaric 240 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0194 and PP_0195 overlap by 22 nucleotides PP_0195 and PP_0196 are separated by 50 nucleotides
PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314
_0194
PP_0195: PP_0195 - conserved protein of unknown function, at 245,293 to 245,772
_0195
PP_0196: PP_0196 - putative of ABC superfamily informational factor: ATP-binding components, at 245,823 to 247,733
_0196
Position (kb) 245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 244.319 kb on + strand at 244.347 kb on + strand at 244.351 kb on + strand at 244.352 kb on - strand at 244.359 kb on + strand at 244.360 kb on - strand at 244.531 kb on + strand, within PP_0194 at 244.532 kb on - strand at 244.625 kb on + strand, within PP_0194 at 244.625 kb on + strand, within PP_0194 at 244.681 kb on - strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.685 kb on - strand, within PP_0194 at 245.053 kb on + strand, within PP_0194 at 245.629 kb on + strand, within PP_0195 at 245.630 kb on - strand, within PP_0195 at 245.735 kb on + strand at 245.735 kb on + strand at 245.735 kb on + strand at 245.736 kb on - strand at 245.807 kb on - strand at 245.848 kb on + strand at 245.849 kb on - strand at 245.849 kb on - strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.873 kb on - strand at 245.873 kb on - strand at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand at 246.192 kb on - strand, within PP_0196 at 246.502 kb on - strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.607 kb on - strand, within PP_0196 at 246.607 kb on - strand, within PP_0196
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL remove 244,319 + -0.2 244,347 + +0.4 244,351 + +1.3 244,352 - +1.4 244,359 + +0.6 244,360 - +1.1 244,531 + PP_0194 0.21 -0.1 244,532 - -1.7 244,625 + PP_0194 0.30 -0.9 244,625 + PP_0194 0.30 +0.8 244,681 - PP_0194 0.36 -0.7 244,684 + PP_0194 0.36 -3.8 244,684 + PP_0194 0.36 +0.4 244,684 + PP_0194 0.36 +0.3 244,684 + PP_0194 0.36 -0.4 244,685 - PP_0194 0.36 +0.7 245,053 + PP_0194 0.74 -2.4 245,629 + PP_0195 0.70 -1.3 245,630 - PP_0195 0.70 -1.2 245,735 + +0.1 245,735 + +0.4 245,735 + +0.2 245,736 - -0.7 245,807 - -0.2 245,848 + +1.1 245,849 - +1.8 245,849 - -0.9 245,872 + -0.1 245,872 + +0.7 245,872 + -0.2 245,872 + +0.2 245,873 - -0.3 245,873 - -0.9 246,069 + PP_0196 0.13 -0.2 246,069 + PP_0196 0.13 +1.7 246,069 + PP_0196 0.13 +0.4 246,069 + PP_0196 0.13 -0.5 246,069 + PP_0196 0.13 +0.0 246,070 - PP_0196 0.13 -1.0 246,070 - PP_0196 0.13 +0.1 246,190 - PP_0196 0.19 -0.2 246,190 - PP_0196 0.19 +0.1 246,190 - -0.1 246,192 - PP_0196 0.19 -0.1 246,502 - PP_0196 0.36 -0.2 246,567 + PP_0196 0.39 -0.6 246,567 + PP_0196 0.39 -1.0 246,607 - PP_0196 0.41 -0.6 246,607 - PP_0196 0.41 +0.5
Or see this region's nucleotide sequence