Strain Fitness in Pseudomonas putida KT2440 around PP_0150

Experiment: R2A with Fusaric 240 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0149 and PP_0150 overlap by 4 nucleotidesPP_0150 and PP_0151 are separated by 36 nucleotidesPP_0151 and PP_0152 are separated by 89 nucleotides PP_0149: PP_0149 - conserved exported protein of unknown function, at 158,433 to 160,388 _0149 PP_0150: PP_0150 - conserved exported protein of unknown function, at 160,385 to 160,705 _0150 PP_0151: PP_0151 - conserved exported protein of unknown function, at 160,742 to 161,035 _0151 PP_0152: PP_0152 - conserved exported protein of unknown function, at 161,125 to 161,505 _0152 Position (kb) 160 161Strain fitness (log2 ratio) -3 -2 -1 0 1at 159.536 kb on - strand, within PP_0149at 159.547 kb on + strand, within PP_0149at 159.548 kb on - strand, within PP_0149at 159.548 kb on - strand, within PP_0149at 159.564 kb on + strand, within PP_0149at 159.564 kb on + strand, within PP_0149at 159.573 kb on + strand, within PP_0149at 159.671 kb on - strand, within PP_0149at 159.676 kb on + strand, within PP_0149at 159.677 kb on - strand, within PP_0149at 159.677 kb on - strand, within PP_0149at 159.677 kb on - strand, within PP_0149at 159.700 kb on + strand, within PP_0149at 159.700 kb on + strand, within PP_0149at 159.701 kb on - strand, within PP_0149at 159.721 kb on + strand, within PP_0149at 159.722 kb on - strand, within PP_0149at 159.742 kb on + strand, within PP_0149at 159.743 kb on - strand, within PP_0149at 159.743 kb on - strand, within PP_0149at 159.766 kb on + strand, within PP_0149at 159.766 kb on + strand, within PP_0149at 159.766 kb on + strand, within PP_0149at 159.766 kb on + strand, within PP_0149at 159.767 kb on - strand, within PP_0149at 159.767 kb on - strand, within PP_0149at 159.767 kb on - strand, within PP_0149at 159.767 kb on - strand, within PP_0149at 159.767 kb on - strand, within PP_0149at 159.829 kb on + strand, within PP_0149at 159.829 kb on + strand, within PP_0149at 159.829 kb on + strand, within PP_0149at 159.829 kb on + strand, within PP_0149at 159.830 kb on - strand, within PP_0149at 159.830 kb on - strand, within PP_0149at 159.830 kb on - strand, within PP_0149at 159.830 kb on - strand, within PP_0149at 160.003 kb on + strand, within PP_0149at 160.004 kb on - strand, within PP_0149at 160.140 kb on + strand, within PP_0149at 160.140 kb on + strand, within PP_0149at 160.159 kb on + strand, within PP_0149at 160.274 kb on + strandat 160.275 kb on - strandat 160.397 kb on + strandat 160.413 kb on - strandat 160.459 kb on + strand, within PP_0150at 160.460 kb on - strand, within PP_0150at 160.460 kb on - strand, within PP_0150at 160.481 kb on + strand, within PP_0150at 160.739 kb on + strandat 160.739 kb on + strandat 160.740 kb on - strandat 160.740 kb on - strandat 160.740 kb on - strandat 160.740 kb on - strandat 160.740 kb on - strandat 160.743 kb on + strandat 160.743 kb on + strandat 160.744 kb on - strandat 160.744 kb on - strandat 160.808 kb on + strand, within PP_0151at 160.809 kb on - strand, within PP_0151at 160.894 kb on + strand, within PP_0151at 160.894 kb on + strand, within PP_0151at 160.894 kb on + strand, within PP_0151at 160.941 kb on + strand, within PP_0151at 160.942 kb on - strand, within PP_0151at 161.029 kb on - strandat 161.351 kb on - strand, within PP_0152at 161.433 kb on + strand, within PP_0152at 161.434 kb on - strand, within PP_0152at 161.481 kb on - strandat 161.529 kb on + strandat 161.568 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
remove
159,536 - PP_0149 0.56 -0.7
159,547 + PP_0149 0.57 -0.9
159,548 - PP_0149 0.57 +0.2
159,548 - PP_0149 0.57 +0.8
159,564 + PP_0149 0.58 -0.1
159,564 + PP_0149 0.58 -0.9
159,573 + PP_0149 0.58 +0.7
159,671 - PP_0149 0.63 -0.4
159,676 + PP_0149 0.64 -0.8
159,677 - PP_0149 0.64 +0.4
159,677 - PP_0149 0.64 -3.1
159,677 - PP_0149 0.64 -0.1
159,700 + PP_0149 0.65 +0.2
159,700 + PP_0149 0.65 -0.2
159,701 - PP_0149 0.65 +0.0
159,721 + PP_0149 0.66 -1.1
159,722 - PP_0149 0.66 +0.2
159,742 + PP_0149 0.67 -1.0
159,743 - PP_0149 0.67 -1.3
159,743 - PP_0149 0.67 -0.4
159,766 + PP_0149 0.68 +1.1
159,766 + PP_0149 0.68 +1.5
159,766 + PP_0149 0.68 +0.1
159,766 + PP_0149 0.68 +0.4
159,767 - PP_0149 0.68 +0.5
159,767 - PP_0149 0.68 +0.9
159,767 - PP_0149 0.68 -0.8
159,767 - PP_0149 0.68 -1.4
159,767 - PP_0149 0.68 -0.1
159,829 + PP_0149 0.71 -1.7
159,829 + PP_0149 0.71 -0.5
159,829 + PP_0149 0.71 -1.1
159,829 + PP_0149 0.71 -0.3
159,830 - PP_0149 0.71 -0.5
159,830 - PP_0149 0.71 +0.2
159,830 - PP_0149 0.71 +0.4
159,830 - PP_0149 0.71 +0.5
160,003 + PP_0149 0.80 -1.4
160,004 - PP_0149 0.80 -0.6
160,140 + PP_0149 0.87 -0.4
160,140 + PP_0149 0.87 +1.0
160,159 + PP_0149 0.88 +0.5
160,274 + -0.4
160,275 - -0.1
160,397 + -0.3
160,413 - +0.8
160,459 + PP_0150 0.23 +0.2
160,460 - PP_0150 0.23 +0.2
160,460 - PP_0150 0.23 +0.8
160,481 + PP_0150 0.30 +1.2
160,739 + -0.2
160,739 + +0.1
160,740 - -0.5
160,740 - -0.0
160,740 - -1.2
160,740 - -0.1
160,740 - -1.2
160,743 + -1.0
160,743 + +0.4
160,744 - +0.5
160,744 - -0.7
160,808 + PP_0151 0.22 +0.9
160,809 - PP_0151 0.23 -0.4
160,894 + PP_0151 0.52 +0.1
160,894 + PP_0151 0.52 -0.1
160,894 + PP_0151 0.52 -0.4
160,941 + PP_0151 0.68 +0.9
160,942 - PP_0151 0.68 -0.2
161,029 - -0.2
161,351 - PP_0152 0.59 -1.9
161,433 + PP_0152 0.81 +0.6
161,434 - PP_0152 0.81 +0.5
161,481 - +0.9
161,529 + +1.0
161,568 + +0.1

Or see this region's nucleotide sequence