Strain Fitness in Pseudomonas putida KT2440 around PP_3887

Experiment: R2A with Fusaric 120 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 120 ug/mL
4,404,589	+		PP_5641	0.11	+0.8
4,404,590	-		PP_5641	0.11	-0.3
4,404,687	+		PP_5641	0.26	-0.0
4,404,687	+		PP_5641	0.26	-1.2
4,404,688	-		PP_5641	0.26	+0.7
4,404,688	-		PP_5641	0.26	-0.2
4,404,736	+		PP_5641	0.34	-0.4
4,404,736	+		PP_5641	0.34	-0.2
4,404,736	+		PP_5641	0.34	-1.9
4,404,736	+		PP_5641	0.34	+0.6
4,404,736	+		PP_5641	0.34	+0.7
4,404,736	+		PP_5641	0.34	+1.0
4,404,736	+		PP_5641	0.34	-0.2
4,404,736	+		PP_5641	0.34	-0.2
4,404,736	+		PP_5641	0.34	-0.4
4,404,736	+		PP_5641	0.34	+0.6
4,404,737	-		PP_5641	0.34	-1.5
4,404,737	-		PP_5641	0.34	+0.4
4,404,737	-		PP_5641	0.34	-0.3
4,404,737	-		PP_5641	0.34	-0.2
4,404,737	-		PP_5641	0.34	-0.5
4,404,737	-		PP_5641	0.34	+0.5
4,404,737	-		PP_5641	0.34	+0.4
4,404,737	-		PP_5641	0.34	+0.1
4,404,737	-		PP_5641	0.34	+1.6
4,404,738	+		PP_5641	0.34	-0.7
4,404,739	-		PP_5641	0.34	+0.8
4,404,739	-		PP_5641	0.34	-0.1
4,404,739	-		PP_5641	0.34	+0.9
4,404,740	+		PP_5641	0.35	-0.4
4,404,741	-		PP_5641	0.35	-0.3
4,404,741	-		PP_5641	0.35	+0.1
4,404,761	+		PP_5641	0.38	+0.3
4,404,761	+		PP_5641	0.38	+0.9
4,404,762	-		PP_5641	0.38	+2.2
4,404,762	-		PP_5641	0.38	-1.1
4,404,762	-		PP_5641	0.38	+1.2
4,404,776	+		PP_5641	0.40	-0.1
4,404,790	+		PP_5641	0.43	+0.6
4,404,808	+		PP_5641	0.45	-0.1
4,404,826	+		PP_5641	0.48	-1.0
4,404,826	+		PP_5641	0.48	+0.9
4,404,826	+		PP_5641	0.48	-0.5
4,404,827	-		PP_5641	0.48	-0.1
4,404,827	-		PP_5641	0.48	-1.0
4,404,836	+		PP_5641	0.50	+0.2
4,404,837	-		PP_5641	0.50	+0.3
4,404,837	-		PP_5641	0.50	+0.7
4,404,837	-		PP_5641	0.50	+0.2
4,404,887	-		PP_5641	0.58	+0.1
4,404,889	+		PP_5641	0.58	+0.2
4,404,889	+		PP_5641	0.58	+0.1
4,404,931	+		PP_5641	0.65	+0.5
4,404,932	-		PP_5641	0.65	-0.0
4,404,932	-		PP_5641	0.65	+1.1
4,404,932	-		PP_5641	0.65	-0.7
4,405,073	+		PP_5641	0.87	+0.9
4,405,095	+				-0.6
4,405,267	+				-0.5
4,405,267	+				-0.7
4,405,268	-				+0.2
4,405,268	-				-0.2
4,405,268	-				+0.9
4,405,268	-				-0.2
4,405,281	+				-0.1
4,405,282	-				+0.3
4,405,404	+		PP_3886	0.40	+1.3
4,405,625	-		PP_3887	0.12	-0.1
4,405,762	+		PP_3887	0.32	-0.0
4,405,794	+		PP_3887	0.37	-0.8
4,405,794	+		PP_3887	0.37	+0.4
4,405,896	+		PP_3887	0.52	-0.5
4,405,896	+		PP_3887	0.52	-0.4
4,405,897	-		PP_3887	0.53	-1.3
4,405,907	-		PP_3887	0.54	-0.1
4,405,951	+		PP_3887	0.61	-0.3
4,405,952	-		PP_3887	0.61	-0.8
4,405,955	+		PP_3887	0.61	+0.1
4,405,955	+		PP_3887	0.61	-3.6
4,405,993	+		PP_3887	0.67	-0.9
4,405,993	+		PP_3887	0.67	-1.5
4,405,993	+		PP_3887	0.67	-1.1
4,405,994	-		PP_3887	0.67	-0.6
4,405,994	-		PP_3887	0.67	-0.0
4,406,043	+		PP_3887	0.74	+0.5
4,406,044	-		PP_3887	0.74	-1.4
4,406,044	-		PP_3887	0.74	-2.0
4,406,207	+				+0.1
4,406,280	+		PP_3888	0.16	+1.2
4,406,280	+		PP_3888	0.16	-0.4
4,406,282	+		PP_3888	0.17	-1.2
4,406,282	+		PP_3888	0.17	+0.1
4,406,282	+		PP_3888	0.17	+0.3
4,406,386	+		PP_3888	0.49	+0.1
4,406,386	+		PP_3888	0.49	-0.6
4,406,635	+				-0.5
4,406,635	+				-0.6
4,406,741	+		PP_3889	0.15	-0.4
4,406,741	+		PP_3889	0.15	+0.8
4,406,741	+		PP_3889	0.15	+0.6
4,406,741	+		PP_3889	0.15	-0.2
4,406,936	+		PP_3889	0.30	-0.3
4,406,937	-		PP_3889	0.30	+0.7
4,406,948	+		PP_3889	0.31	+0.6
4,406,948	+		PP_3889	0.31	+0.3